View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8284_low_14 (Length: 264)
Name: NF8284_low_14
Description: NF8284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8284_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 33652380 - 33652528
Alignment:
| Q |
19 |
aaatagtaccaaccagaattttctgcaaaactatccat---ttaaaaccatgaatgatattaaaacgaaatcaaacatttttgtagaatttattagaaat |
115 |
Q |
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| T |
33652380 |
aaatagtaccaaccagaattttctgcaaaactatccatcagttaaaaccatgaatgatattaaaacgaaatcaaacatttttgtagaatttactagagat |
33652479 |
T |
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| Q |
116 |
aaccaattagcatacgaaggcgatgcaattggtcccatatcattgaata |
164 |
Q |
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| T |
33652480 |
aaccaattagcatacgaaggcgatgcaattggtcccatatcattgaata |
33652528 |
T |
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Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 149
Target Start/End: Original strand, 4365461 - 4365576
Alignment:
| Q |
38 |
tttctgcaaaactatccat---ttaaaaccatgaatgatat-taaaacgaaatcaaacatttttgtagaatttattagaaataaccaattagcatacgaa |
133 |
Q |
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||||||||||||||||| | ||||||||||||||||||| ||||| |||||||||||||| ||||||||||||| || ||||||||||| |||||||| |
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| T |
4365461 |
tttctgcaaaactatccttcaattaaaaccatgaatgatatgtaaaatgaaatcaaacatttctgtagaatttattggagataaccaattaacatacgaa |
4365560 |
T |
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| Q |
134 |
ggcgatgcaattggtc |
149 |
Q |
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| T |
4365561 |
ggagatgcagttggtc |
4365576 |
T |
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