View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8284_low_16 (Length: 246)
Name: NF8284_low_16
Description: NF8284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8284_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 30651968 - 30651736
Alignment:
| Q |
8 |
acatgtcaaaccggagactgcggaggccaattgaaatgcaagggaattggtggtgttcctccagctacacttgttgaaatgacacttggaacctcacatt |
107 |
Q |
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| T |
30651968 |
acatgtcaaaccggagactgcggaggccaattgaaatgcaagggaattggtggtgttcctccagctacacttgttgaaatgacacttggaacctcacatt |
30651869 |
T |
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| Q |
108 |
cacctctacattactatgatgttagtttagttgacggttttaaccttccaatgtcgatgaaacctattggtggcggtgttggttgtggaattgcttcttg |
207 |
Q |
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| T |
30651868 |
cacctctacattactatgatgttagtttagttgacggttttaaccttccaatgtcgatgaaacctattggtgggggtgttggttgtggcattgctacttg |
30651769 |
T |
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| Q |
208 |
tcaagctgatttgaatggttgatgtccatctca |
240 |
Q |
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| T |
30651768 |
tcaagctgatttgaatggttgttgtccatctca |
30651736 |
T |
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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 237
Target Start/End: Complemental strand, 22787447 - 22787272
Alignment:
| Q |
62 |
gttcctccagctacacttgttgaaatgacacttggaacctcacattcacctctacattactatgatgttagtttagttgacggttttaaccttccaatgt |
161 |
Q |
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| T |
22787447 |
gttccaccagcaacagtagttgaaatgacactaggatcatcatcttcaccactacatttctatgatgtgagtttagttgatggtttcaatttacctgttt |
22787348 |
T |
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| Q |
162 |
cgatgaaacctattggtggcggtgttggttgtggaattgcttcttgtcaagctgatttgaatggttgatgtccatc |
237 |
Q |
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| T |
22787347 |
caatgaaacctgttggtggtggaattggttgtggaatagcttcttgtgaagttgatttgaatgtttgttgtccatc |
22787272 |
T |
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