View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8284_low_18 (Length: 241)
Name: NF8284_low_18
Description: NF8284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8284_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 40078347 - 40078125
Alignment:
| Q |
1 |
catggttgcccaggcgtttctcttgtttcaggagaagaatggctatcaagattcttattatacagctagatacagagtgcacatgacaattataaatcat |
100 |
Q |
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| T |
40078347 |
catggttgcccaggcgtttctcttgtttcaggagaagaatggctatcaagattcttattatacagctagatacatagtgcacatgacaattataaatcat |
40078248 |
T |
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| Q |
101 |
atgatattattgggtggcctatctcatctcactcattagtgtccaacgaaaatcgccaacaatagcagtttctaaatctaatgagaaactgctccttctg |
200 |
Q |
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| T |
40078247 |
atgatattattgggtggcctatctcatctcactcattagtgtccaacgaaaatcgccaacaatagcagtttctaaatctaatgagaaactgctccttctg |
40078148 |
T |
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| Q |
201 |
ttgtgtatttggggttcaggctc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
40078147 |
ttgtgtatttggggttcaggctc |
40078125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 86 - 223
Target Start/End: Complemental strand, 40087584 - 40087447
Alignment:
| Q |
86 |
acaattataaatcatatgatattattgggtggcctatctcatctcactcattagtgtccaacgaaaatcgccaacaatagcagtttctaaatctaatgag |
185 |
Q |
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| T |
40087584 |
acaattataaaccgtacgctattgctgggtggtttagctcatctcactcattaatgtcccacgaaaaccaccatcaacagcagcttctaaatctaataaa |
40087485 |
T |
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| Q |
186 |
aaactgctccttctgttgtgtatttggggttcaggctc |
223 |
Q |
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| T |
40087484 |
gaactgctccttctgttgtgtatctttggttcaggctc |
40087447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 40073033 - 40072978
Alignment:
| Q |
1 |
catggttgcccaggcgtttctcttgtttcaggagaagaatggctatcaagattctt |
56 |
Q |
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||||||| |||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
40073033 |
catggtttcccaggtgtagctcttgtttcaggagaagaatggctatcaagattctt |
40072978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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