View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8284_low_19 (Length: 234)
Name: NF8284_low_19
Description: NF8284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8284_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 23134850 - 23134642
Alignment:
| Q |
19 |
gccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttagtcaataatccaacacctgaacccgac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23134850 |
gccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttagtcaataatccaacacctgaacccgac |
23134751 |
T |
|
| Q |
119 |
cctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccacaaaagaccaaattggtgaaactagctatcataaggatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23134750 |
cctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccacaaaagaccaaattggtgaaactagctatcataaggatg |
23134651 |
T |
|
| Q |
219 |
atgtccatc |
227 |
Q |
| |
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|||| |||| |
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|
| T |
23134650 |
atgttcatc |
23134642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 20282731 - 20282939
Alignment:
| Q |
19 |
gccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttagtcaataatccaacacctgaacccgac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20282731 |
gccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttagtcaataatccaacacctgaacccgac |
20282830 |
T |
|
| Q |
119 |
cctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccacaaaagaccaaattggtgaaactagctatcataaggatg |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20282831 |
cctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccacaaaagaccaaattggtgaaactagctatcataaggatg |
20282930 |
T |
|
| Q |
219 |
atgtccatc |
227 |
Q |
| |
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|||| |||| |
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|
| T |
20282931 |
atgttcatc |
20282939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 11895030 - 11895238
Alignment:
| Q |
19 |
gccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttagtcaataatccaacacctgaacccgac |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11895030 |
gccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttagtcaataatccaacacctgaacccgac |
11895129 |
T |
|
| Q |
119 |
cctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccacaaaagaccaaattggtgaaactagctatcataaggatg |
218 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11895130 |
ccgaattcaagtttcatgctcgccacccccattctaaatgaccaagaagctaaccaccccacaaaagaccaaattggtgaaactagctatcataaggatg |
11895229 |
T |
|
| Q |
219 |
atgtccatc |
227 |
Q |
| |
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|||| |||| |
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|
| T |
11895230 |
atgttcatc |
11895238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 14655947 - 14655859
Alignment:
| Q |
23 |
aaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttagtcaataatccaacacctga |
111 |
Q |
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|||||||| ||||| ||||||| ||||||||||||||| ||||||| |||| |||||| ||||| | ||||||||| ||||||||| |
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| T |
14655947 |
aaaacaactcaacaattaccaaataaacaaactaccactaatgaagctcaaaaaaatgttcccattgttatcaataatcaaacacctga |
14655859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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