View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8284_low_3 (Length: 466)
Name: NF8284_low_3
Description: NF8284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8284_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 99 - 447
Target Start/End: Original strand, 36448120 - 36448468
Alignment:
| Q |
99 |
ccaaagcaagttagtggagataacattatttaacaaaggacattatcgtccatagataaaccacaagaaacaatcccttacacaaacatggaacaatggc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36448120 |
ccaaagcaagttagtggagataacattatttaacaaaggacattatcgtccatagataaaccacaagaaacaatcccttacacaaacatggaacaatggc |
36448219 |
T |
|
| Q |
199 |
ggaactgaagtaaactagatagaaatcacaacctccatttccaaaaacctcataaacccacaaccttaaaaaaccttaccttaacttcatcattcatggc |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36448220 |
ggaactgaagtaaactagatagaaatcacaacctccatttccataaacctcataaacccacaaccttaaaaaaccttaccttaacttcatcattcatggc |
36448319 |
T |
|
| Q |
299 |
gaccaatctcccagaacacttcaaatgtccaatctcactcgaaataatgtccgacccagtcatcctctcttccggtcacacattcgatcgtccttcaatc |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36448320 |
gaccaatctcccagaacacttcaaatgtccaatctcactcgaaataatgtccgacccagtcatcctctcttccggtcacacattcgatcgtccttcaatc |
36448419 |
T |
|
| Q |
399 |
caacgttggcttgacgaaggtcatcgtacttgtccaattaccaaactac |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36448420 |
caacgttggcttgacgaaggtcatcgtacttgtccaattaccaaactac |
36448468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 443
Target Start/End: Complemental strand, 2660305 - 2660174
Alignment:
| Q |
312 |
gaacacttcaaatgtccaatctcactcgaaataatgtccgacccagtcatcctctcttccggtcacacattcgatcgtccttcaatccaacgttggcttg |
411 |
Q |
| |
|
|||||||| || || ||||| || || ||||| |||||||| || || |||||||| |||||||| || || || ||| |||||||||||| ||||||| |
|
|
| T |
2660305 |
gaacacttgaagtgcccaatttcgcttgaaattatgtccgatccggttatcctctcctccggtcagacctttgaccgttcttcaatccaacaatggcttg |
2660206 |
T |
|
| Q |
412 |
acgaaggtcatcgtacttgtccaattaccaaa |
443 |
Q |
| |
|
|| |||||| || | |||||||| |||||| |
|
|
| T |
2660205 |
acctaggtcaccggaaatgtccaatcaccaaa |
2660174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 15972047 - 15972087
Alignment:
| Q |
312 |
gaacacttcaaatgtccaatctcactcgaaataatgtccga |
352 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
15972047 |
gaacacttcaaatgtccaatttcacttgaaatcatgtccga |
15972087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University