View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8284_low_4 (Length: 463)
Name: NF8284_low_4
Description: NF8284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8284_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 1702327 - 1701881
Alignment:
| Q |
1 |
agactccaagattaagataattaggagtggaaccaaacagaatttcattaggacatttgtttttaagatgtgttgttgtcatgcgatttattaaatacac |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1702327 |
agactcgaagattaagataattaggagtggaaccaaacagaatttcatgaggacatttgtttttaagatgtgttgttggcatgcgatttattaaatacac |
1702228 |
T |
|
| Q |
101 |
cgccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgatgtttgcgttctgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1702227 |
cgccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgatgtttgcgttctgca |
1702128 |
T |
|
| Q |
201 |
ataccaatatgttcgggagtgtacggtgggctgatatcgtgagatataccatgagagttaagatatggcttgagttttatgtattcagtgccaccatcgg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1702127 |
ataccaatatgttcgggagtgtacggtgggctgatatagtgagatataccatgagagttaagatatggcttgagttttatgtattcagtgccaccatcgg |
1702028 |
T |
|
| Q |
301 |
tgtagagggatttaactttgtatgaaaacatagtttcaacttttgaatgaaaatttggaaatatagtaacaacatcagttttactttttaacagataaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1702027 |
tgtagagggatttaactttgtatgaaaacatagtttcaacttttgaatgaaaatttggaaatatagtaacaacatcagttttactttttaacggataaat |
1701928 |
T |
|
| Q |
401 |
ccaagaatattgagtaaaatgatcaacaaacacaagataatatttgt |
447 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1701927 |
ccaagaatatcgagtaaaatgatcaacaaacacaagataatatttgt |
1701881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 102 - 447
Target Start/End: Complemental strand, 3541937 - 3541592
Alignment:
| Q |
102 |
gccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgatgtttgcgttctgcaa |
201 |
Q |
| |
|
|||||||| || ||||||||||||||| |||| || ||| ||||||||| | || ||||| | |||||||||||||| || ||||||||||| |||| |
|
|
| T |
3541937 |
gccatttgaaaagcataacaccagaatgtttgaggtacagaagagtgagagagaagtgtgagagcagtttctactatatggcggtgtttgcgttcagcaa |
3541838 |
T |
|
| Q |
202 |
taccaatatgttcgggagtgtacggtgggctgatatcgtgagatataccatgagagttaagatatggcttgagttttatgtattcagtgccaccatcggt |
301 |
Q |
| |
|
| ||||| ||||| ||||| || |||||||| || | || ||||| ||||| | || | ||||||||||||||| | ||||||||| |||||||| || |
|
|
| T |
3541837 |
tgccaatgtgttcaggagtataaggtgggctaatgtaatgggatattccatgtgtattgaaatatggcttgagtttaaagtattcagttccaccatcagt |
3541738 |
T |
|
| Q |
302 |
gtagagggatttaactttgtatgaaaacatagtttcaacttttgaatgaaaatttggaaatatagtaacaacatcagttttactttttaacagataaatc |
401 |
Q |
| |
|
||| | ||||| ||||||| || || | |||||| ||| |||||||| | |||||||| || | ||||||||||| |||| | |||||||| |
|
|
| T |
3541737 |
gtaaatagatttgactttgtgggagaaaaagttttcaattttagaatgaaattgaggaaatatgatagctacatcagttttgtttttaagtggataaatc |
3541638 |
T |
|
| Q |
402 |
caagaatattgagtaaaatgatcaacaaacacaagataatatttgt |
447 |
Q |
| |
|
|| | || |||| ||||| |||||||| ||||||||||| |||| |
|
|
| T |
3541637 |
cacgtgtagcgagtgaaatggtcaacaaagacaagataatacttgt |
3541592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 447
Target Start/End: Complemental strand, 31098935 - 31098867
Alignment:
| Q |
379 |
ttttactttttaacagataaatccaagaatattgagtaaaatgatcaacaaacacaagataatatttgt |
447 |
Q |
| |
|
|||||||||||| |||||||||| |||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31098935 |
ttttactttttaggggataaatccatttatatctagtaaaatgatcaacgaacacaagataatatttgt |
31098867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 102 - 442
Target Start/End: Complemental strand, 5400962 - 5400622
Alignment:
| Q |
102 |
gccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgatgtttgcgttctgcaa |
201 |
Q |
| |
|
|||||||| || ||||||||||||||| |||| || ||| ||||||||| | || ||||| | |||||||||||||| || ||||||||||| |||| |
|
|
| T |
5400962 |
gccatttgaaaagcataacaccagaatgtttgaggtacagaagagtgagagagaagtgtgagagcagtttctactatatggcggtgtttgcgttcagcaa |
5400863 |
T |
|
| Q |
202 |
taccaatatgttcgggagtgtacggtgggctgatatcgtgagatataccatgagagttaagatatggcttgagttttatgtattcagtgccaccatcggt |
301 |
Q |
| |
|
| ||||| ||||| ||||| || |||||||| || | || ||||| ||||| | || | ||||||||||||||| | ||||||||| |||||||| || |
|
|
| T |
5400862 |
tgccaatgtgttcaggagtataaggtgggctaatgtaatgggatattccatgtgtattgaaatatggcttgagtttaaagtattcagttccaccatcagt |
5400763 |
T |
|
| Q |
302 |
gtagagggatttaactttgtatgaaaacatagtttcaacttttgaatgaaaatttggaaatatagtaacaacatcagttttactttttaacagataaatc |
401 |
Q |
| |
|
||| | ||||| ||||||| || || | |||||| ||| |||||||| | |||||||| || | ||||||||||| |||| | |||||||| |
|
|
| T |
5400762 |
gtaaatagatttgactttgtgggagaaaaagttttcaattttagaatgaaattgaggaaatatgatagctacatcagttttgtttttaagtggataaatc |
5400663 |
T |
|
| Q |
402 |
caagaatattgagtaaaatgatcaacaaacacaagataata |
442 |
Q |
| |
|
|| | || |||| ||||| |||||||| ||||||||||| |
|
|
| T |
5400662 |
cacgtgtagcgagtgaaatggtcaacaaagacaagataata |
5400622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 26592278 - 26592339
Alignment:
| Q |
168 |
gtttctactatatgacgatgtttgcgttctgcaataccaatatgttcgggagtgtacggtgg |
229 |
Q |
| |
|
||||| |||||||| | |||||||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
26592278 |
gtttcgactatatggcaatgtttgcgttctgcaatgccaatatgttcaggagtgtaaggtgg |
26592339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University