View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8284_low_7 (Length: 369)

Name: NF8284_low_7
Description: NF8284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8284_low_7
NF8284_low_7
[»] chr6 (8 HSPs)
chr6 (17-358)||(2447387-2447728)
chr6 (258-358)||(2584037-2584137)
chr6 (258-358)||(2678895-2678995)
chr6 (262-358)||(2431311-2431407)
chr6 (258-358)||(2617822-2617922)
chr6 (258-358)||(2601716-2601816)
chr6 (258-358)||(2646494-2646594)
chr6 (258-358)||(2574314-2574414)
[»] chr7 (1 HSPs)
chr7 (262-358)||(17874982-17875078)


Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 358
Target Start/End: Complemental strand, 2447728 - 2447387
Alignment:
Q  17 gtatagttttcaagttagaataaattaacaaacaattaatgtcacacatacaatgaaacgccgacgcaatacttgacactgacacatgtagtaatttgag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2447728 gtatagttttcaagttagaataaattaacaaacaattaatgtcacacatacaatgaaacgccgacgcaatacttgacactgacacatgtagtaatttgag 2447629  T
Q  117 aaatagaagtgattgtatgtatgtaaccacaattgtcagtatcgtgttggtgtatgaccgatcatgtcagacactgacacatgtcttcgatctgtagtgt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  2447628 aaatagaagtgattgtatgtatgtaaccacaattgtcagtatcgtgttggtgtatgaccgatcatgtcaaacactgacatatgtcttcgatctgtagtgt 2447529  T
Q  217 cggtgctacatagcataaagtagaatgatattttttaagaacttttcactaaggacatcttgaattattaggctgtcactagagacattggtgatgactt 316  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2447528 cggtgctacatagcataaagtagaatgatattttttaagaccttttcactaaggacatcttgaattattaggctgtcactagagacattggtgatgactt 2447429  T
Q  317 ctgatatgcttgtaccgtgcaaatcaaagtatgctacttctt 358  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2447428 ctgatatgcttgtaccgtgcaaatcaaagtatgctacttctt 2447387  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 258 - 358
Target Start/End: Complemental strand, 2584137 - 2584037
Alignment:
Q  258 cttttcactaaggacatcttgaattattaggctgtcactagagacattggtgatgacttctgatatgcttgtaccgtgcaaatcaaagtatgctacttct 357  Q
    |||||||||||| ||||||||||||| |||| ||||  |||||||| | ||||||||||||||| |||||||| | ||||||||||||||||||||||||    
T  2584137 cttttcactaagaacatcttgaattactaggatgtcgttagagacacttgtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctacttct 2584038  T
Q  358 t 358  Q
    |    
T  2584037 t 2584037  T

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Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 258 - 358
Target Start/End: Original strand, 2678895 - 2678995
Alignment:
Q  258 cttttcactaaggacatcttgaattattaggctgtcactagagacattggtgatgacttctgatatgcttgtaccgtgcaaatcaaagtatgctacttct 357  Q
    |||||||||||| ||||||||||| | |||||||||  |||||||| | ||||||||||||||| |||||||| | ||||||||||||||||||||||||    
T  2678895 cttttcactaagaacatcttgaatcactaggctgtcgttagagacacttgtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctacttct 2678994  T
Q  358 t 358  Q
    |    
T  2678995 t 2678995  T

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Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 262 - 358
Target Start/End: Complemental strand, 2431407 - 2431311
Alignment:
Q  262 tcactaaggacatcttgaattattaggctgtcactagagacattggtgatgacttctgatatgcttgtaccgtgcaaatcaaagtatgctacttctt 358  Q
    |||||||| ||||||||||||| ||||||||||||||| ||| |||||||||| |||| | |||||||| | |||||||||||||||| ||||||||    
T  2431407 tcactaagaacatcttgaattactaggctgtcactagatacactggtgatgacatctgttgtgcttgtaacatgcaaatcaaagtatgatacttctt 2431311  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 358
Target Start/End: Complemental strand, 2617922 - 2617822
Alignment:
Q  258 cttttcactaaggacatcttgaattattaggctgtcactagagacattggtgatgacttctgatatgcttgtaccgtgcaaatcaaagtatgctacttct 357  Q
    |||||||||||| ||||||||||||| |||| ||||  | |||||| | ||||||||||||||| |||||||| | ||||||||||||||||||||||||    
T  2617922 cttttcactaagaacatcttgaattactaggatgtcgtttgagacacttgtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctacttct 2617823  T
Q  358 t 358  Q
    |    
T  2617822 t 2617822  T

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Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 258 - 358
Target Start/End: Original strand, 2601716 - 2601816
Alignment:
Q  258 cttttcactaaggacatcttgaattattaggctgtcactagagacattggtgatgacttctgatatgcttgtaccgtgcaaatcaaagtatgctacttct 357  Q
    |||||| ||||  |||||||||||||  ||||| ||| | |||||| ||||||||||||||||| |||||||| | ||||||||||||||||||||||||    
T  2601716 cttttcgctaataacatcttgaattaccaggctatcattggagacactggtgatgacttctgatgtgcttgtaacatgcaaatcaaagtatgctacttct 2601815  T
Q  358 t 358  Q
    |    
T  2601816 t 2601816  T

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Target: chr6; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 258 - 358
Target Start/End: Original strand, 2646494 - 2646594
Alignment:
Q  258 cttttcactaaggacatcttgaattattaggctgtcactagagacattggtgatgacttctgatatgcttgtaccgtgcaaatcaaagtatgctacttct 357  Q
    |||||||||||| || ||||||||||  || |||||  |||||||| ||||||||||||||||| ||||||||   |||||||||||||||| |||||||    
T  2646494 cttttcactaagaacgtcttgaattaccagactgtcgttagagacactggtgatgacttctgatgtgcttgtaatatgcaaatcaaagtatgatacttct 2646593  T
Q  358 t 358  Q
    |    
T  2646594 t 2646594  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 358
Target Start/End: Original strand, 2574314 - 2574414
Alignment:
Q  258 cttttcactaaggacatcttgaattattaggctgtcactagagacattggtgatgacttctgatatgcttgtaccgtgcaaatcaaagtatgctacttct 357  Q
    |||||| ||||  |||||||||||||  ||||| ||| | |||||| ||||||||||||||||| ||||||||   |||||||||||||| ||||| |||    
T  2574314 cttttcgctaataacatcttgaattacgaggctatcattggagacactggtgatgacttctgatgtgcttgtaatatgcaaatcaaagtaagctacatct 2574413  T
Q  358 t 358  Q
    |    
T  2574414 t 2574414  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 358
Target Start/End: Original strand, 17874982 - 17875078
Alignment:
Q  262 tcactaaggacatcttgaattattaggctgtcactagagacattggtgatgacttctgatatgcttgtaccgtgcaaatcaaagtatgctacttctt 358  Q
    |||||||| |||||||||||||  |   ||||| |||||||| | ||||||| ||||||  |||||||| | ||||||||||| || || |||||||    
T  17874982 tcactaagaacatcttgaattacaatagtgtcattagagacactagtgatgatttctgaggtgcttgtaacctgcaaatcaaaataagcaacttctt 17875078  T

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