View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8284_low_8 (Length: 353)
Name: NF8284_low_8
Description: NF8284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8284_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 9592904 - 9592594
Alignment:
| Q |
16 |
atgaattaggaactttaaatttcaatgttatctttgcatgtaatttctcctctttaagaaatgtgcatatacttaatcttaatctttcctgataaatttc |
115 |
Q |
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| T |
9592904 |
atgaattaggaactttaaatttcaatgttatctttgcatgtaatttctgctcttaaagaaatgtgcatatacttaatctt------tcctgataaatttc |
9592811 |
T |
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| Q |
116 |
ttactattaatctggttgttgtactttatgtttttctggtcaatttgaagcaaattcatatttggaaaaccacgaatcacatgcttgtgatattctgcag |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9592810 |
ttactattaatctggttgttgtactttatgtttttctggtcaatttgaagcaaattcatatttggaaaaccacgaatcacatgcttgtgatattctgtag |
9592711 |
T |
|
| Q |
216 |
caggtaccaattacaaatacaatgttgttaagtatttgtattatgctgactttggtt-ttttgtaataatggatagcaattcaactccactgacatcatt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9592710 |
caggtaccaattacaaatacaatgttgttaagtatttgtattatgctgaatttggtttttttgtaataatggatagcaattcaactccactgacatcatt |
9592611 |
T |
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| Q |
315 |
atacaggatcatctgtc |
331 |
Q |
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||||||||||||||||| |
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| T |
9592610 |
atacaggatcatctgtc |
9592594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 29014630 - 29014680
Alignment:
| Q |
106 |
gataaatttcttactattaatctggttgttgtactttatgtttttctggtc |
156 |
Q |
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| T |
29014630 |
gataactttcttactattgatctggtagttgtactttatgttattgtggtc |
29014680 |
T |
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