View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8284_low_9 (Length: 332)
Name: NF8284_low_9
Description: NF8284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8284_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 45694833 - 45695075
Alignment:
| Q |
14 |
ggacatcagttaatcatagtttgtgttttcttaattctgttgaatatattaaattgatagaattattttttctccacttttatgtaacaatatgtggaca |
113 |
Q |
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| T |
45694833 |
ggacattagttaatcatagtttgtgttttcttaattctgttgaatatattaaattgatagaattattttttctccacttttatgtaacaatatgtgaaca |
45694932 |
T |
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| Q |
114 |
tggtttttaatattgaccaaacatcaacatgggatagtcatacatacattatggttgagtttttaactactttccttctatatatcacgcaggataaggc |
213 |
Q |
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| T |
45694933 |
tggtttttaatattgaccaaacatcaacatgggatagtcatacatacattatggttgagtttttaactactttccttctatatatcacgcaggataaggc |
45695032 |
T |
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| Q |
214 |
cctccaagaacataacaacatgctcaccaagaaggtaatgatg |
256 |
Q |
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| T |
45695033 |
cctccaagaacataacaacatgctcaccaagaaggtaatgatg |
45695075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 314
Target Start/End: Original strand, 45695095 - 45695133
Alignment:
| Q |
276 |
aacaactatgccgaatatggtgtttggatttggaataat |
314 |
Q |
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| T |
45695095 |
aacaactatgccgaatgtggtgtttggatttggaataat |
45695133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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