View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8285_high_1 (Length: 990)
Name: NF8285_high_1
Description: NF8285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8285_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 318 - 853
Target Start/End: Original strand, 45315021 - 45315560
Alignment:
| Q |
318 |
gaatatctaaataagtgatatgatgtaccggagtgagttttttgatataatgtaattttatagagtatttcaaattcttcaaaataaatcaattgattga |
417 |
Q |
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| T |
45315021 |
gaatatctaaataaatgatatgatgtacccgagtgagttttttgatataatgtaattttatagagtatttcaaattcttcaaaataaatcaattgattga |
45315120 |
T |
|
| Q |
418 |
atgatagatttgaagaattctaagatcgaagggattttatgaaatattttgcaaacttagttcagaaaatttcaaatatcacttaaaattaaaaatttga |
517 |
Q |
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| T |
45315121 |
atgatagatttgaagaattctaagattggaggtattttatgaaatattttgcaaacttagttcagaaaatttcaaataccacttaaaattaaaaatttga |
45315220 |
T |
|
| Q |
518 |
aatttcttgactatgtactctatacaacgttaatttcaattttatcctcaatattttgtaattaatgcctaaaaatttacttaaaattgaaagttgatcc |
617 |
Q |
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| T |
45315221 |
aatttcttgac----tactctatacaacgttaatttcaattttatcctcaatattttgtaattaatgcctaaaaatttacttaaaattgaaagttggtcc |
45315316 |
T |
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| Q |
618 |
caaaatgttgctctattttcatatttttaaatttgacccaaaaaa-ttgaaatgaaagaagttcaactgaaaagtttaaattgcttaaaaatc----ttt |
712 |
Q |
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| T |
45315317 |
caaaatgttgctctattttcatatttttaaatttgacccaaaaaatttgaaatgaaagaagttcaactgaaaagtttaaattgcttaaaaatcttttttt |
45315416 |
T |
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| Q |
713 |
cnnnnnnnnctaatatta-----atcgttcaaacacaggtatgcannnnnnnnnaaaggagacacagtgtatgcatttaattttcattatattcctaatg |
807 |
Q |
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| T |
45315417 |
tttttttttctaatattaatttcatcgttcaaacacaggtatgcatttttttt--aaggagacacagtgtatgcatttaattttcattatattcctaatg |
45315514 |
T |
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| Q |
808 |
cgtcatatctatatctactattctattgcctcaagaaaatatctat |
853 |
Q |
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| T |
45315515 |
cgtcatatctatatctactattctattgcctcaagaaaatatctat |
45315560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 107 - 242
Target Start/End: Original strand, 45314834 - 45314969
Alignment:
| Q |
107 |
aagttaaactagcccactgaaattaacaatagtgagaatcgaacttgcgaccttaaggaggaggaacacactctaaggtctcaagtcaacaccaccaagt |
206 |
Q |
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| T |
45314834 |
aagttaaactagcccactcaaattaacaacagtgagaatcgaacttgcgaccttgaggaggaggagcacactctaaggtctcaagtcaacaccaccaagt |
45314933 |
T |
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| Q |
207 |
aaactcaagtaggttcagttttgataggttgttcac |
242 |
Q |
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| T |
45314934 |
aaactcaagtgggttcagttttgataggttgttcac |
45314969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 882 - 971
Target Start/End: Original strand, 45315599 - 45315688
Alignment:
| Q |
882 |
agggtactatctcttaatcattttgctattgacagacagctggtgtgtggagatataatgggacctaacaaaatagtgttgagacgactg |
971 |
Q |
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| T |
45315599 |
agggtactatctcttaattattttgctattgacagacagctggtgtgtggagatataatgggacctaacaaaatagtgttgagacgactg |
45315688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 45314749 - 45314794
Alignment:
| Q |
13 |
tttggtgttaggcattttcatagttattcagcataagcatagtaca |
58 |
Q |
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| T |
45314749 |
tttggtgttaggcattttcatggttattcagcataagcatagtaca |
45314794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 216
Target Start/End: Original strand, 14787305 - 14787407
Alignment:
| Q |
111 |
taaactagcccactgaaattaacaatagtgagaatcgaacttgcgaccttaaggaggaggaacacactctaaggtctcaagtcaacaccaccaagtaaac |
210 |
Q |
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| T |
14787305 |
taaactaacccacttaaattgatattagagagaatcgaacctgacacctt---gaggagaaacacactctcaggtctcaagtcaataccactaggtcaac |
14787401 |
T |
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| Q |
211 |
tcaagt |
216 |
Q |
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|||||| |
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| T |
14787402 |
tcaagt |
14787407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 201
Target Start/End: Complemental strand, 45222470 - 45222436
Alignment:
| Q |
167 |
gaggaacacactctaaggtctcaagtcaacaccac |
201 |
Q |
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| T |
45222470 |
gaggaacacactttaaggtctcaagtcaacaccac |
45222436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 19949635 - 19949691
Alignment:
| Q |
164 |
gaggaggaacacactctaaggtctcaagtcaacaccaccaagtaaactcaagtaggtt |
221 |
Q |
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| T |
19949635 |
gaggaggagcacactcta-gatctcaagtcaataccaccaagtcaacccaagtaggtt |
19949691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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