View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8285_high_5 (Length: 388)
Name: NF8285_high_5
Description: NF8285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8285_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 5216710 - 5217086
Alignment:
| Q |
1 |
acactttgttttatgcgattaattatattccgattagttaattaattatgtagattactttatgagtacgtaattaattttctgttaattggcagggttt |
100 |
Q |
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| T |
5216710 |
acactttgttttatgtgattaattatattccgattagttaattaattatgttgattactttatgagtacgtaattaattttctgttaattggcagggttt |
5216809 |
T |
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| Q |
101 |
gtatagataataatacttgtaaagactgcactgttgtgaaggttcgatacaattctctaatttatttaattccttatgtcttgttttgtagtgaccttgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5216810 |
gtatagataataatacttgtaaagactgcactgttgtgaaggttcgatacaattctctaatttatttaattccttatgtcttgttttgtagtgaccttgc |
5216909 |
T |
|
| Q |
201 |
aaacttcaaaataaatcatgcctcttatgtatctagacatttaatttggtaggtattctctgaaaatgacgtcatcctgttatcatattagagtcggttt |
300 |
Q |
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||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5216910 |
aaagttcaaaataaatcatgcctcttatgtatatagacatttaatttggtaggtattctctgaaaatgacgtcatcctgttatcaaattagagtcggttt |
5217009 |
T |
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| Q |
301 |
attcataaaatgtaccaaaaaaggacacaccagtttagaaattggaagacatatgaagtacagaaacctacggaaca |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5217010 |
attcataaaatgtaccaaaaaaggacacaccagtttagaaattggaaggcatatgaagtacagaaacctacggaaca |
5217086 |
T |
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