View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8285_low_11 (Length: 222)
Name: NF8285_low_11
Description: NF8285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8285_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 35883098 - 35882926
Alignment:
| Q |
12 |
agcagagacacaaatacccaaacgcaatcatatccaggaaccatagattttgtattttattttccacataacatgaaattgtgacacaccaccacacaac |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35883098 |
agcaaagacacaaatacccaaacgcaatcatatccaggaaccatagattttgtattttattttccacataacatgaaattgtgacacaccaccacacaac |
35882999 |
T |
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| Q |
112 |
catgttatggaacagagaataggacattagaaaattaaaaacccgtgaaagctagccattaatgaatgatagttgca |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35882998 |
catgttatggaacagagaataggacattagaaaattaaaaacccgtgaa----agccattaatgaatgatagttgca |
35882926 |
T |
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Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 24457299 - 24457127
Alignment:
| Q |
12 |
agcagagacacaaatacccaaacgcaatcatatccaggaaccatagattttgtattttattttccacataacatgaaattgtgacacaccaccacacaac |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24457299 |
agcaaagacacaaatacccaaacgcaatcatatccaggaaccatagattttgtattttattttccacataacatgaaattgtgacacaccaccacacaac |
24457200 |
T |
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| Q |
112 |
catgttatggaacagagaataggacattagaaaattaaaaacccgtgaaagctagccattaatgaatgatagttgca |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24457199 |
catgttatggaacagagaataggacattagaaaattaaaaacccgtgaa----agccattaatgaatgatagttgca |
24457127 |
T |
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