View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8285_low_2 (Length: 491)
Name: NF8285_low_2
Description: NF8285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8285_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 22 - 403
Target Start/End: Complemental strand, 46544447 - 46544064
Alignment:
| Q |
22 |
ggtacacacatgctttatttttcacttcaataattcagaaccgttatattaattggtcctcgtagtttatttatgaagaatgtaagatgcttcttttcaa |
121 |
Q |
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| T |
46544447 |
ggtacacacatgctttatttttcacttcaataattcagaaccgttatattaattggtcctcgtagtttatttatgaagaatgtaatatgcttcttttcaa |
46544348 |
T |
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| Q |
122 |
tgcaattactaccagtatttatgtttccatacattgatttaatgctcaaacttttttccaccggtgtcagtccaactataaagaacgttatgacttttac |
221 |
Q |
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| T |
46544347 |
tgcatttattaccagtatttatgtttccatacattgatttaatgctcaaacttttttccaccggtgtcagtccaactataaagaacgttacgacttttac |
46544248 |
T |
|
| Q |
222 |
gccagttagctaatgattagtgcttaagttaatgatcttagtcgttaatgatataaacctaacaatcaaaattgctatttaaaccatatcatcttaatta |
321 |
Q |
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| T |
46544247 |
gccagttagctaatgattagtgcttaagttaatgatcttagtcgttaataatataaatctaacaatcaaaattgctatttaaaccatatcatcttaatta |
46544148 |
T |
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| Q |
322 |
acctcttgtatatcgaatgagaaaaag--aaagtgaaaaataaatagagacagtggcactatatatatctgttgaatttaaacc |
403 |
Q |
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| T |
46544147 |
acctcttgtatatcgaatgagaaaaagaaaaagtgaaaaataaatagagacagtggcactatatatatctgttgaatttaaacc |
46544064 |
T |
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