View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8285_low_3 (Length: 433)

Name: NF8285_low_3
Description: NF8285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8285_low_3
NF8285_low_3
[»] chr4 (2 HSPs)
chr4 (1-110)||(27316318-27316428)
chr4 (117-157)||(6509856-6509896)
[»] chr3 (4 HSPs)
chr3 (111-193)||(28424311-28424393)
chr3 (388-430)||(28424587-28424629)
chr3 (248-314)||(28424448-28424513)
chr3 (110-157)||(45807043-45807090)
[»] chr8 (3 HSPs)
chr8 (112-193)||(23388234-23388315)
chr8 (248-314)||(23388367-23388433)
chr8 (384-430)||(23388503-23388549)
[»] chr7 (3 HSPs)
chr7 (384-430)||(42840951-42840997)
chr7 (110-189)||(42840750-42840830)
chr7 (117-157)||(40740666-40740706)
[»] scaffold0380 (1 HSPs)
scaffold0380 (118-157)||(6112-6151)
[»] chr5 (1 HSPs)
chr5 (110-157)||(10021004-10021051)
[»] chr1 (4 HSPs)
chr1 (111-157)||(17050398-17050444)
chr1 (111-157)||(51606914-51606960)
chr1 (125-157)||(38688643-38688675)
chr1 (125-157)||(49420098-49420130)
[»] chr2 (1 HSPs)
chr2 (108-144)||(44094086-44094122)


Alignment Details
Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 27316318 - 27316428
Alignment:
Q  1 tcacatgttgcaaacaatt-atgcagaggaccatcattcaatccttatctaagaatattagttacttatggtaagtaaatacatcatcaaagataaatag 99  Q
    ||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| ||| |||||||||| |||||||||||||||    
T  27316318 tcacatgttgcaaacaatttatgcagaggatcatcattcaatcctaatctaagaatattagttacttatagtatgtaaatacatgatcaaagataaatag 27316417  T
Q  100 gattaaacata 110  Q
    |||||||||||    
T  27316418 gattaaacata 27316428  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 6509896 - 6509856
Alignment:
Q  117 gtttagcctgggaaagcaaagttgtttcccatgatgggaaa 157  Q
    |||||||||||||||||||||||| ||||||  ||||||||    
T  6509896 gtttagcctgggaaagcaaagttgcttcccagcatgggaaa 6509856  T

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Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 111 - 193
Target Start/End: Original strand, 28424311 - 28424393
Alignment:
Q  111 ggtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaactttgctctttacctgcagctggcagtcatgacctg 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28424311 ggtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaactttgctttttacctgcagctggcagtcatgacctg 28424393  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 388 - 430
Target Start/End: Original strand, 28424587 - 28424629
Alignment:
Q  388 gctctccttctctgcatctttcttattgttcctcttctctgct 430  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  28424587 gctcttcttctctgcatctttcttattgttcctcttctctgct 28424629  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 28424448 - 28424513
Alignment:
Q  248 gactttgcattctcaaagaacaaatgactcgtctgttgtcacaatcctaatccaattgcacactgtt 314  Q
    ||||||||||||||| |||||||||||||| | || ||||| ||||||| ||||||||||| |||||    
T  28424448 gactttgcattctcagagaacaaatgactcatttg-tgtcataatcctactccaattgcacgctgtt 28424513  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 45807090 - 45807043
Alignment:
Q  110 aggtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaa 157  Q
    |||||| ||||||  ||||||||||||||||||||| |||||||||||    
T  45807090 aggtggggtttagaatgggaaagcaaagttgtttcctatgatgggaaa 45807043  T

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Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 112 - 193
Target Start/End: Original strand, 23388234 - 23388315
Alignment:
Q  112 gtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaactttgctctttacctgcagctggcagtcatgacctg 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||    
T  23388234 gtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaaatttgctttttacctgcagctggcagtcctgacctg 23388315  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 23388367 - 23388433
Alignment:
Q  248 gactttgcattctcaaagaacaaatgactcgtctgttgtcacaatcctaatccaattgcacactgtt 314  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23388367 gactttgcattctaagagaacaaatgactcgtctgttgtcacaatcctaatccaattgcacactgtt 23388433  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 23388503 - 23388549
Alignment:
Q  384 ctcagctctccttctctgcatctttcttattgttcctcttctctgct 430  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||    
T  23388503 ctcagctcttcttctctgcatctttcttattgttcctcttccctgct 23388549  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 42840951 - 42840997
Alignment:
Q  384 ctcagctctccttctctgcatctttcttattgttcctcttctctgct 430  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||    
T  42840951 ctcagcttttcttctctgcatctttcttattgttcctcttctctgct 42840997  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 42840750 - 42840830
Alignment:
Q  110 aggtggcgtttagcctgggaaagcaaagttgtttcc-catgatgggaaactttgctctttacctgcagctggcagtcatga 189  Q
    |||||||||| || | ||||||| ||||||||||   ||||||||||||||||||| ||||||| ||| ||||||||||||    
T  42840750 aggtggcgttaagtcggggaaagtaaagttgttttttcatgatgggaaactttgctttttacctccagttggcagtcatga 42840830  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 40740666 - 40740706
Alignment:
Q  117 gtttagcctgggaaagcaaagttgtttcccatgatgggaaa 157  Q
    ||||||| |||||||| ||| ||||||||||||||||||||    
T  40740666 gtttagcatgggaaaggaaaattgtttcccatgatgggaaa 40740706  T

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Target: scaffold0380 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 157
Target Start/End: Complemental strand, 6151 - 6112
Alignment:
Q  118 tttagcctgggaaagcaaagttgtttcccatgatgggaaa 157  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  6151 tttagcctgggaaaccaaagttgtttcccatgatgggaaa 6112  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 10021004 - 10021051
Alignment:
Q  110 aggtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaa 157  Q
    ||||| |||||||||||||||| |||| | ||||||||||||||||||    
T  10021004 aggtgccgtttagcctgggaaaacaaactagtttcccatgatgggaaa 10021051  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 17050444 - 17050398
Alignment:
Q  111 ggtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaa 157  Q
    ||||| ||||||| |||||||  ||||||||||||||||||||||||    
T  17050444 ggtggagtttagcttgggaaatgaaagttgtttcccatgatgggaaa 17050398  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 51606914 - 51606960
Alignment:
Q  111 ggtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaa 157  Q
    ||||| ||||||| |||| ||| ||||||||||||||||||||||||    
T  51606914 ggtggagtttagcatgggcaaggaaagttgtttcccatgatgggaaa 51606960  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 38688675 - 38688643
Alignment:
Q  125 tgggaaagcaaagttgtttcccatgatgggaaa 157  Q
    |||||||| ||||||||||||||||||||||||    
T  38688675 tgggaaagaaaagttgtttcccatgatgggaaa 38688643  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 49420098 - 49420130
Alignment:
Q  125 tgggaaagcaaagttgtttcccatgatgggaaa 157  Q
    |||||||| ||||||||||||||||||||||||    
T  49420098 tgggaaaggaaagttgtttcccatgatgggaaa 49420130  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 44094086 - 44094122
Alignment:
Q  108 ataggtggcgtttagcctgggaaagcaaagttgtttc 144  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  44094086 ataggtggcatttagcctgggaaatcaaagttgtttc 44094122  T

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