View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8285_low_4 (Length: 395)
Name: NF8285_low_4
Description: NF8285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8285_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 2 - 365
Target Start/End: Original strand, 301875 - 302240
Alignment:
| Q |
2 |
tatttagttctgtcaatttctaccgcaatgttgtctttgtttaattctattctggtgagatatagttttcttgggaagctattctcttatgtatgttttt |
101 |
Q |
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| T |
301875 |
tatttagttctgtcaatttctaccgcaatgttgtctttgtttaattctattctggtgagatatagttttctttggaagctattctcttatgtatgttttt |
301974 |
T |
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| Q |
102 |
atacggttaactgttatctcatttctcattcttttaggcagaaacatgagccgaactgttatttttaatatttttacctaatcgcaggcatttgatcgag |
201 |
Q |
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| T |
301975 |
atacggttaactgttatctcatttctcattcttttaggcagaaacatgagccgaactgttatttttaatatttttacctaatcgcaggcatttgatcgag |
302074 |
T |
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| Q |
202 |
acatgtgaaaaatattgtatccatattctggtgtgcatatttgtcattttacaatagactgatcttccagcttaagcaaatccttgttcaaatttta--a |
299 |
Q |
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| T |
302075 |
acatgtgaaaaatattgtatccatattctggtgtgaatatttgtcattttacaatagactgatcttccagcttcagcaaatccttgttcaaattttaata |
302174 |
T |
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| Q |
300 |
tgtctttttacaaattttctttttgaaatagttgcatcctttataaaattttgattgattccaagg |
365 |
Q |
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| T |
302175 |
tgtctttttacaaattttctttttgaaatagttgcatcctttataaaaaatttattgattccaagg |
302240 |
T |
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