View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8286_high_3 (Length: 555)

Name: NF8286_high_3
Description: NF8286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8286_high_3
NF8286_high_3
[»] chr5 (23 HSPs)
chr5 (19-296)||(1163625-1163902)
chr5 (324-540)||(1163930-1164146)
chr5 (324-540)||(1849620-1849836)
chr5 (336-540)||(3299149-3299353)
chr5 (336-540)||(3392042-3392246)
chr5 (21-226)||(1849904-1850112)
chr5 (84-226)||(3299472-3299617)
chr5 (84-226)||(3392365-3392510)
chr5 (335-535)||(38987356-38987556)
chr5 (73-225)||(40418223-40418375)
chr5 (341-535)||(40417946-40418140)
chr5 (74-226)||(39879753-39879905)
chr5 (73-226)||(38987644-38987797)
chr5 (74-226)||(39726357-39726509)
chr5 (335-489)||(39726115-39726269)
chr5 (335-489)||(39879517-39879671)
chr5 (74-223)||(39399801-39399950)
chr5 (87-226)||(39168785-39168924)
chr5 (343-489)||(39168603-39168749)
chr5 (358-489)||(39399601-39399735)
chr5 (335-501)||(40596325-40596485)
chr5 (19-70)||(3299652-3299703)
chr5 (19-70)||(3392545-3392596)
[»] chr4 (3 HSPs)
chr4 (351-540)||(25912538-25912727)
chr4 (84-219)||(25912295-25912430)
chr4 (87-152)||(44444772-44444837)


Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 1163625 - 1163902
Alignment:
Q  19 acaactctaccattctcctctttagcaaaactaatcttggtaatcaaaatgggatctccttcaggcaggtcataaccaagagcatggtcaccgggtttta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163625 acaactctaccattctcctctttagcaaaactaatcttggtaatcaaaatgggatctccttcaggcaggtcataaccaagagcatggtcaccgggtttta 1163724  T
Q  119 aaatacgaccaagatgagtcctgatttgaaaagtgtgattattatttccaatatctttgacacgagcaactatggcattagctaaacgatattttttggc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163725 aaatacgaccaagatgagtcctgatttgaaaagtgtgattattatttccaatatctttgacacgagcaactatggcattagctaaacgatattttttggc 1163824  T
Q  219 agcagcagtataagtagcaaaagcatcaccatcttcatcatgttcatccttaaaaaccagcttcttcttctgtttatt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163825 agcagcagtataagtagcaaaagcatcaccatcttcatcatgttcatccttaaaaaccagcttcttcttctgtttatt 1163902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 324 - 540
Target Start/End: Original strand, 1163930 - 1164146
Alignment:
Q  324 atctaatttctcaataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaa 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163930 atctaatttctcaataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaa 1164029  T
Q  424 cagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1164030 cagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat 1164129  T
Q  524 tactaggcagaataatc 540  Q
    |||||||||||||||||    
T  1164130 tactaggcagaataatc 1164146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 324 - 540
Target Start/End: Complemental strand, 1849836 - 1849620
Alignment:
Q  324 atctaatttctcaataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaa 423  Q
    |||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||  || ||||||||||||||    
T  1849836 atctaatttctcgataccgagaacaacatattccactaactgatgcctagagaatgaaggcgtgaagggtgcatcccagtaacgatcagcctttaagaaa 1849737  T
Q  424 cagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat 523  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1849736 cagcgggtcaaggtaaatggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat 1849637  T
Q  524 tactaggcagaataatc 540  Q
    |||||||||||||||||    
T  1849636 tactaggcagaataatc 1849620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 336 - 540
Target Start/End: Complemental strand, 3299353 - 3299149
Alignment:
Q  336 aataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag 435  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299353 aataccgagaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag 3299254  T
Q  436 gtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa 535  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  3299253 gtaaatggatcaagcaaagtaaatattttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaa 3299154  T
Q  536 taatc 540  Q
    |||||    
T  3299153 taatc 3299149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 336 - 540
Target Start/End: Complemental strand, 3392246 - 3392042
Alignment:
Q  336 aataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag 435  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392246 aataccgagaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag 3392147  T
Q  436 gtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa 535  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  3392146 gtaaatggatcaagcaaagtaaatattttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaa 3392047  T
Q  536 taatc 540  Q
    |||||    
T  3392046 taatc 3392042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 21 - 226
Target Start/End: Complemental strand, 1850112 - 1849904
Alignment:
Q  21 aactctaccattctcctctttagcaaaactaatcttggtaatcaaaatgggatctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1850112 aactctaccattctcctctttagcaaaactaatcttggtaatcaaaatgggatctccttcaggcaggtcataaccaagagcatggtcaccaggttttaaa 1850013  T
Q  121 atacgaccaagatgagtcctgatttgaaaa---gtgtgattattatttccaatatctttgacacgagcaactatggcattagctaaacgatattttttgg 217  Q
    ||||||| ||||||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1850012 atacgactaagatgagtcctgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaactatggcattagctaaacgatattttttgg 1849913  T
Q  218 cagcagcag 226  Q
    |||||||||    
T  1849912 cagcagcag 1849904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 84 - 226
Target Start/End: Complemental strand, 3299617 - 3299472
Alignment:
Q  84 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaa---gtgtgattattatttccaatatctttgaca 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||| |||    
T  3299617 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 3299518  T
Q  181 cgagcaactatggcattagctaaacgatattttttggcagcagcag 226  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||    
T  3299517 cgagcaaccatggcatcagctaaacgatattttttggcagcagcag 3299472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 84 - 226
Target Start/End: Complemental strand, 3392510 - 3392365
Alignment:
Q  84 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaa---gtgtgattattatttccaatatctttgaca 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||| |||    
T  3392510 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 3392411  T
Q  181 cgagcaactatggcattagctaaacgatattttttggcagcagcag 226  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||    
T  3392410 cgagcaaccatggcatcagctaaacgatattttttggcagcagcag 3392365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 335 - 535
Target Start/End: Complemental strand, 38987556 - 38987356
Alignment:
Q  335 caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa 434  Q
    ||||| |||||||| ||||||| |||||||||| ||||  ||||||| | ||||| ||||| | |||||| |||  ||| | ||||||||||||||||||    
T  38987556 caatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaa 38987457  T
Q  435 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcaga 534  Q
    |||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||||||| ||| ||||  |||||||    
T  38987456 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaataggaccaatatttggacccaaagaagcaacaacattaggaggcaga 38987357  T
Q  535 a 535  Q
    |    
T  38987356 a 38987356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 73 - 225
Target Start/End: Complemental strand, 40418375 - 40418223
Alignment:
Q  73 tctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaata 171  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||    
T  40418375 tctcctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccaata 40418277  T
Q  172 tctttgacacgagcaactatggcattagctaaacgatattttttggcagcagca 225  Q
    ||||| ||||||||||| |  |||| |||||||| |||||||||||||||||||    
T  40418276 tctttcacacgagcaaccacagcatcagctaaacaatattttttggcagcagca 40418223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 341 - 535
Target Start/End: Complemental strand, 40418140 - 40417946
Alignment:
Q  341 cgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaa 440  Q
    |||||||| ||||||| |||||||||| ||||  ||||||| | ||||| ||||| | |||||| |||  ||| | ||||||||||||||||||||||||    
T  40418140 cgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaa 40418041  T
Q  441 tggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa 535  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||  ||| ||||||||| ||| ||||  ||||||||    
T  40418040 tggatcaagcaaagtaaatgttttggcaaccctagtgcaaatgacaataggaccaatattttcaccgaaagaagcaacaacattaggaggcagaa 40417946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 74 - 226
Target Start/End: Complemental strand, 39879905 - 39879753
Alignment:
Q  74 ctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatat 172  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||| |||    
T  39879905 ctcctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccagtat 39879807  T
Q  173 ctttgacacgagcaactatggcattagctaaacgatattttttggcagcagcag 226  Q
    |||| ||||||||||| |  |||| ||||||||||||||||||||| |||||||    
T  39879806 ctttcacacgagcaaccacagcatcagctaaacgatattttttggcggcagcag 39879753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 73 - 226
Target Start/End: Complemental strand, 38987797 - 38987644
Alignment:
Q  73 tctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaata 171  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| | |||||||||| ||    
T  38987797 tctcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg-tcattatttccagta 38987699  T
Q  172 tctttgacacgagcaactatggcattagctaaacgatattttttggcagcagcag 226  Q
    ||||| ||||||||||| |  |||| ||||||||||||||||||||| |||||||    
T  38987698 tctttcacacgagcaaccacagcatcagctaaacgatattttttggcggcagcag 38987644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 74 - 226
Target Start/End: Complemental strand, 39726509 - 39726357
Alignment:
Q  74 ctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatat 172  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| | |||||||||| |||    
T  39726509 ctcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg-tcattatttccagtat 39726411  T
Q  173 ctttgacacgagcaactatggcattagctaaacgatattttttggcagcagcag 226  Q
    |||| ||||||||||| |  |||| ||||||||||||||||||||| |||||||    
T  39726410 ctttcacacgagcaaccacagcatcagctaaacgatattttttggcggcagcag 39726357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 335 - 489
Target Start/End: Complemental strand, 39726269 - 39726115
Alignment:
Q  335 caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa 434  Q
    ||||| |||||||| ||||||| |||||||||| ||||  ||||||| | ||||| ||||| | |||||| |||  ||| | ||||||||||||||||||    
T  39726269 caatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaa 39726170  T
Q  435 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaata 489  Q
    |||||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  39726169 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaata 39726115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 335 - 489
Target Start/End: Complemental strand, 39879671 - 39879517
Alignment:
Q  335 caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa 434  Q
    ||||| |||||||| ||||||| |||||||||| ||||  ||||||| | ||||| ||||| | |||||| |||  ||| | ||||||||||||||||||    
T  39879671 caatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaa 39879572  T
Q  435 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaata 489  Q
    |||||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  39879571 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaata 39879517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 74 - 223
Target Start/End: Complemental strand, 39399950 - 39399801
Alignment:
Q  74 ctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatat 172  Q
    ||||| ||| || ||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||| |||| | ||||||||||| ||    
T  39399950 ctcctccagacaagtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccaaaat 39399852  T
Q  173 ctttgacacgagcaactatggcattagctaaacgatattttttggcagcag 223  Q
     ||  ||||||||||| | ||||| ||||||||| |||||||| |||||||    
T  39399851 tttccacacgagcaaccacggcatcagctaaacggtattttttagcagcag 39399801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 87 - 226
Target Start/End: Complemental strand, 39168924 - 39168785
Alignment:
Q  87 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacgagc 185  Q
    ||||||||||||||||| |||||||| |||||||||| |||| ||||||||  |||||||||||| |||| | ||||||||||| |||||  ||||||||    
T  39168924 gtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg-tcattatttccaaaatcttccacacgagc 39168826  T
Q  186 aactatggcattagctaaacgatattttttggcagcagcag 226  Q
    ||| | ||||| |||||| ||||||||||||||||||||||    
T  39168825 aaccacggcatcagctaaccgatattttttggcagcagcag 39168785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 343 - 489
Target Start/End: Complemental strand, 39168749 - 39168603
Alignment:
Q  343 agaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatg 442  Q
    |||||| |||||| ||||||||||| ||||| ||||||| ||||||||||||||| |||||| | | ||||||||||| || |    |||||||||||||    
T  39168749 agaacaacatatttcactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactcatcagcctttaaggaaaaagcagtcaaggtaaatg 39168650  T
Q  443 gatcaagcaaagtaaatgttttggcaaccctagtacaaataacaata 489  Q
    ||||||| ||||||| | |||||||||||||||| || |||||||||    
T  39168649 gatcaagtaaagtaatttttttggcaaccctagtgcatataacaata 39168603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 358 - 489
Target Start/End: Complemental strand, 39399735 - 39399601
Alignment:
Q  358 actaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaa---ag 454  Q
    |||||||||| ||||  ||||||| ||||||| ||||||| |||||| ||| ||||||||||| || |   ||||||||||||||||||||||||   ||    
T  39399735 actaactgagtcctattgaatgaatgcgtgaaaggtgcattccagtagtgatcagcctttaaggaaaaagcggtcaaggtaaatggatcaagcaaagtag 39399636  T
Q  455 taaatgttttggcaaccctagtacaaataacaata 489  Q
    ||| | |||||||||||||||| || || ||||||    
T  39399635 taatttttttggcaaccctagtgcatatgacaata 39399601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 501
Target Start/End: Complemental strand, 40596485 - 40596325
Alignment:
Q  335 caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa 434  Q
    ||||| |||| |||| ||||||||||||||||  ||||| || ||||||||||||  |||||| |||||| ||| || | ||||||| |||||   ||||    
T  40596485 caatatcgagcacagaatattccactaactgactcctagtgagtgaaggcgtgaaaagtgcattccagtactgatcaacatttaagatacagtacctcaa 40596386  T
Q  435 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatattt 501  Q
    ||| ||   |||||||||||||| | |||| ||||||    ||||||| | |||||||| |||||||    
T  40596385 ggtgaa--aatcaagcaaagtaattcttttagcaacc----tacaaatgataataggactaatattt 40596325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 3299703 - 3299652
Alignment:
Q  19 acaactctaccattctcctctttagcaaaactaatcttggtaatcaaaatgg 70  Q
    ||||||||||||||||||||||  ||| ||||||| ||||| ||||||||||    
T  3299703 acaactctaccattctcctcttcggcataactaattttggtgatcaaaatgg 3299652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 3392596 - 3392545
Alignment:
Q  19 acaactctaccattctcctctttagcaaaactaatcttggtaatcaaaatgg 70  Q
    ||||||||||||||||||||||  ||| ||||||| ||||| ||||||||||    
T  3392596 acaactctaccattctcctcttcggcataactaattttggtgatcaaaatgg 3392545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 4e-55; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 351 - 540
Target Start/End: Original strand, 25912538 - 25912727
Alignment:
Q  351 atattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagc 450  Q
    |||||| |||||||||||||||| |||| |||||||||||||||||| |||||| ||| ||||||| |||||||| || ||||||||||||||||||||     
T  25912538 atattcaactaactgaggcctagtgaattaaggcgtgaagggtgcattccagtactgatcagccttcaagaaacaatgagtcaaggtaaatggatcaagt 25912637  T
Q  451 aaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatc 540  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||  ||  ||||||||||||| ||||  |||||||| ||||    
T  25912638 aaagtaaatgttttggcaaccctagtgcaaatgacaataggaccaatatttacactgaaagaagcagcaacattaggaggcagaaaaatc 25912727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 84 - 219
Target Start/End: Original strand, 25912295 - 25912430
Alignment:
Q  84 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacg 182  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| |||||    
T  25912295 caggtcataaccaagagcatggtcatcgggttttagaatacgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccaatatctttcacacg 25912393  T
Q  183 agcaactatggcattagctaaacgatattttttggca 219  Q
    |||||| |   ||| ||||||||||||||||||||||    
T  25912394 agcaaccacatcatcagctaaacgatattttttggca 25912430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 44444772 - 44444837
Alignment:
Q  87 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagt 152  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||    
T  44444772 gtcataaccaagagcatagtcaccaggttttaaaatacgaccaagatgagtcttgatttgaaaagt 44444837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University