View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8286_low_10 (Length: 320)
Name: NF8286_low_10
Description: NF8286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8286_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 45073646 - 45073406
Alignment:
| Q |
23 |
gatttgattctagtgtgttttagttattaatttttt-gttagacaatgatttgtgtttggaagggaacttatcatgttctgctta-------cgttaact |
114 |
Q |
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| T |
45073646 |
gatttgattctagtgtgttttagttattaatttttttgttagacaatgatttgtgtttggaagggaacttatcatgttctgcttattattgacgttaact |
45073547 |
T |
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| Q |
115 |
tagtttgtgttctgcagctaacaaactcatggttggatttattccgcaggtatacatcctatgcaggtttatttccattgctgtcaagtgggctactgcc |
214 |
Q |
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| T |
45073546 |
tagtttgtgttctgcagctaacaaactcatggttggatttattccgcaggtatacatcctatgcaggtttatttccattgctgtcaagtgggctactgcc |
45073447 |
T |
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| Q |
215 |
atttcttgaggttgaagaattatctcagacaattgattctg |
255 |
Q |
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| T |
45073446 |
atttcttgaggttgaagaattatctcagacaattgattctg |
45073406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 23 - 300
Target Start/End: Complemental strand, 8880507 - 8880220
Alignment:
| Q |
23 |
gatttgattctagtgtgttttagttattaatttttt---gttagacaatgatttgtgtttggaagggaacttatcatgttctgcttac-------gttaa |
112 |
Q |
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| T |
8880507 |
gatttgattctagtgtgttttagttattaattttttattgttagacaatgatttgtgtttggaagggaa-ttctcatattctgcttattattaatgttaa |
8880409 |
T |
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| Q |
113 |
ctt-agtttgtgttctgcagctaacaaactcatggttggatttattccgcaggtatacatcctatgcaggtttatttccattgctgtcaagtgggctact |
211 |
Q |
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| T |
8880408 |
ctttagcttgtgttctgcagctaacaaacttatagttggatttattccgcaggtatacatcctatgcaggtttatttccattgttgtcaagcgggctact |
8880309 |
T |
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| Q |
212 |
gccatttcttgaggttgaagaattatctcagacaattgattctgaaaggttaagtgtccaaaactctgttctgtttgctggtccattga |
300 |
Q |
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| T |
8880308 |
gccattactcgaggttgaagaattatctcagactattgattctgaaagtttaagtgtccaaaactccgttctgttagctggtccattga |
8880220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 122 - 300
Target Start/End: Complemental strand, 8884201 - 8884020
Alignment:
| Q |
122 |
tgttctgcagctaacaaactcatggttggatttat---tccgcaggtatacatcctatgcaggtttatttccattgctgtcaagtgggctactgccattt |
218 |
Q |
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| T |
8884201 |
tgttctgcagctaataaactcgtggtttgatttgtggttcttcaggtatacatcctttgccggtttatttccattgctttcgagcggactactgccatta |
8884102 |
T |
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| Q |
219 |
cttgaggttgaagaattatctcagacaattgattctgaaaggttaagtgtccaaaactctgttctgtttgctggtccattga |
300 |
Q |
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| T |
8884101 |
cttacggttgaagaaatatctcagactattgactctgaaagtttgactgtccaaaactctgttctgtttgctggtccattga |
8884020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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