View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8286_low_12 (Length: 291)
Name: NF8286_low_12
Description: NF8286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8286_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 30034028 - 30033770
Alignment:
| Q |
15 |
ccaccatttccatgtcaaacattcttttaattaatcaatgagataagacgatggactctaaatgcattgtgtttgacgtatgaaatacttcttattttca |
114 |
Q |
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| T |
30034028 |
ccaccatttccatctcaaacattcttttaattactcaatgagataagacgatggactctaaatgcattgtgtttgatgtatgaaatacttcttattttca |
30033929 |
T |
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| Q |
115 |
tttgttaattaacgtgaaaaatattgataggaggtatctaattaaaattcgagagaagcctgatgcctaaattaaattcataactttgttcgaaataatt |
214 |
Q |
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| T |
30033928 |
tttgttaattaacgtgaaaa-tattgataggaggtatctaattaaaattcgagagaagcttgatgcctaaattaaattcagaactttgttccaaataatt |
30033830 |
T |
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| Q |
215 |
agataaatttgctcctaatagttactcttcctccaacaatggaggtggttgtgattgtga |
274 |
Q |
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| T |
30033829 |
agataaatttgctcctaatagttactcttcctccaacaatggaggtggttgtgattgtga |
30033770 |
T |
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Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 272
Target Start/End: Original strand, 23147209 - 23147477
Alignment:
| Q |
15 |
ccaccatttccatgtcaaacattcttttaattaatcaatgagataagacgatggactctaaatgcattgtgtttgacgtatgaaatac--------ttct |
106 |
Q |
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| T |
23147209 |
ccaccatttccatgtcaaacattcttttaattactcaatgacataagaagattgactctaaatgcattgtgtttgatgtatgaaatacccaacgtgttct |
23147308 |
T |
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| Q |
107 |
tattttcatttgttaat---taacgtgaaaaatattgataggaggtatctaattaaaattcgagagaagcctgatgcctaaattaaattcataactttgt |
203 |
Q |
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| T |
23147309 |
tattttcatttgttaataattaacgtgaaaaatattgatatgaggtatctaattaaaattcgagagaagcttgatgcctaaattaaattcataactttgt |
23147408 |
T |
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| Q |
204 |
tcgaaataattagataaatttgctcctaatagttactcttcctccaacaatggaggtggttgtgattgt |
272 |
Q |
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| T |
23147409 |
tccatataattagataaatttgcccctaatagttactcttcctccaacaatggaggcggttgtgattgt |
23147477 |
T |
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