View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8286_low_13 (Length: 288)
Name: NF8286_low_13
Description: NF8286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8286_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 1905791 - 1905517
Alignment:
| Q |
1 |
caactcttgatctgcaaaaagaaaaacataaggaaattaataaagggaagcataaagtgtagcttttgttgaaatcaagcgaagacaaggtgaatttgac |
100 |
Q |
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| T |
1905791 |
caactcttgatctgcaaaaagaaaaacataaggaaattaataaacggaagcataaagtgtagcttttgttgaaatcaagcgaagacacggtgaatttgac |
1905692 |
T |
|
| Q |
101 |
aaaatcgtggcagcaccgtgttgccaaaatcttcgcaacatgcgtgattttgtcaaactcaccgtcaatccaaacagacaccaagttatacacatatgtt |
200 |
Q |
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| T |
1905691 |
aaaatcgtggaagcaccgtgttgccaaaatcttcgcaacatgcgtgattttgtcaaactcaccgtcaatccaaacagacaccaagttatatacatatgtt |
1905592 |
T |
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| Q |
201 |
gtatgttgatgaatattgcaataaataaatgtgaaccttctacttctattgaaaagagtgacaggaagaagaaca |
275 |
Q |
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| T |
1905591 |
gtatgttgatgaatattgcaataaataaatgtgaaccttctacttctattgaaaagagtgacaggaagaagaaca |
1905517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 89 - 275
Target Start/End: Complemental strand, 1895860 - 1895678
Alignment:
| Q |
89 |
ggtgaatttgacaaaatcgtggcagcaccgtgttgccaaaat-cttcgcaacatgcgtgattttgtcaaactcaccgtcaatccaaacagacaccaagtt |
187 |
Q |
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| T |
1895860 |
ggtgaatttgagaaaatcttggtagcaccttgttgccaaaattctt----ata-gcgtgattctgtcaaactcaccgtcaattcaaacatttactaagtt |
1895766 |
T |
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| Q |
188 |
atacacatatgttgtatgttgatgaatattgcaataaataaatgtgaaccttctacttctattgaaaagagtgacaggaagaagaaca |
275 |
Q |
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| T |
1895765 |
atataaatatgttgaatgttaatgaaaattgcaatagataaatgtgaaccttctacttctagtgaaaagtgtgacaggaagaagaaca |
1895678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 181
Target Start/End: Complemental strand, 47812762 - 47812728
Alignment:
| Q |
147 |
attttgtcaaactcaccgtcaatccaaacagacac |
181 |
Q |
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| T |
47812762 |
attttgtcaaactcaccgtcaatccaaacatacac |
47812728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 176
Target Start/End: Complemental strand, 20960890 - 20960857
Alignment:
| Q |
143 |
cgtgattttgtcaaactcaccgtcaatccaaaca |
176 |
Q |
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| T |
20960890 |
cgtgattttgtcaaactcaccgccaatccaaaca |
20960857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 38734255 - 38734223
Alignment:
| Q |
144 |
gtgattttgtcaaactcaccgtcaatccaaaca |
176 |
Q |
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| T |
38734255 |
gtgattttgtcaaactcaccgtcaatctaaaca |
38734223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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