View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8286_low_15 (Length: 282)
Name: NF8286_low_15
Description: NF8286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8286_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 143 - 264
Target Start/End: Original strand, 18427760 - 18427881
Alignment:
| Q |
143 |
tagaaatctgataatccataattttatgcattaattagcctagcccaaaatcaaactatttccttctacaatgaagaatagcaatcatttcatcacaaac |
242 |
Q |
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| T |
18427760 |
tagaaatctgataatccataattgtatgcattaattagcctagcccaaaatcaaactatttccttctacaatgaagaatggcaagcatttcatcacaaac |
18427859 |
T |
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| Q |
243 |
actaaacacgtcctattctcag |
264 |
Q |
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| T |
18427860 |
actaaacacgtcctattctcag |
18427881 |
T |
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Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 18427664 - 18427777
Alignment:
| Q |
16 |
cataaataatgcatatataaatccgataatccaccataatctacactactaacttaagtgcaaagtccagctgcaacgattgcacaagactattactaga |
115 |
Q |
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| T |
18427664 |
cataaataatgcatatataaatctgataatccaccataatctacactactaacttaagtgcaaagtccagctgcaacgattaaacaagactactactaga |
18427763 |
T |
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| Q |
116 |
aatctgataatcca |
129 |
Q |
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| T |
18427764 |
aatctgataatcca |
18427777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 2736036 - 2736122
Alignment:
| Q |
122 |
ataatccaaaaataatctatatagaaatctgataatccataattttatgcattaattagcctagcccaaaatcaaactatttccttc |
208 |
Q |
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|||||||| ||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
2736036 |
ataatccataaataatgcatatagaaatctgatagtccttaattttatgcattaattagcctagcccaaaataaaactaattccttc |
2736122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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