View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8286_low_18 (Length: 242)
Name: NF8286_low_18
Description: NF8286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8286_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 16161023 - 16161252
Alignment:
| Q |
1 |
tgttatttggaataaatccaccttattctccactgtatgcttaatttagcagtgtttttatttacatctacatttatatttttgtggctctatcttcttt |
100 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16161023 |
tgttatttggaataaatccaccttattctccgccgtatgcttaatttagcagtgtttttatttacatctacatttatatttttgtggctttatcttcttt |
16161122 |
T |
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| Q |
101 |
attgctttccttttgttaacctcatcgaagtaaaattatgcaacgccatttatctcttagaggtccatatttaaactactatcctcttattagtttgtcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16161123 |
attgctttccttttgttaacctcatcgaagtaaaattatgcaacgccatttatctcttagaggtccatatttaaactactatcctcttattagtttgtcc |
16161222 |
T |
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| Q |
201 |
atttgtttataattcacattgttggttgat |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
16161223 |
atttgtttataattcacattgttggttgat |
16161252 |
T |
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