View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8286_low_21 (Length: 227)
Name: NF8286_low_21
Description: NF8286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8286_low_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 56 - 218
Target Start/End: Complemental strand, 45073296 - 45073134
Alignment:
| Q |
56 |
tcgatatataattaggattccaattgaggtaagtaaagtccgacaaattatttcaatcaaggatcgaactcatattctaccaaataatttgagcttaact |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45073296 |
tcgatatataattaggattccaattgaggtaagtaaagtccgacaaattattccaatcaaggatcgaactcatattctaccaaataatttgagcttaact |
45073197 |
T |
|
| Q |
156 |
gaagtgtattaaatgtactaattgcttttaggaaattttaaatttcagtttaattagtattat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45073196 |
gaagtgtattaaatgtactaattgcttttaggaaattttaaatttcagtttaattagtattat |
45073134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 45073376 - 45073323
Alignment:
| Q |
1 |
tccattgactactgccattactcgtggttctccttttcgtttatttgtttcctt |
54 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45073376 |
tccattgactactgccattactcgtggttctcctttttgtttatttgtttcctt |
45073323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 56 - 167
Target Start/End: Complemental strand, 8880060 - 8879949
Alignment:
| Q |
56 |
tcgatatataattaggattccaattgaggtaagtaaagtccgacaaattatttcaatcaaggatcgaactcatattctaccaaataatttgagcttaact |
155 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
8880060 |
tcgatatataattagtattccagttgaggtaagtaaagtccgacaaattattacaatcaaggatcaaactcatattctaccaaataatttaagcttaact |
8879961 |
T |
|
| Q |
156 |
gaagtgtattaa |
167 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8879960 |
gaagtgtattaa |
8879949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 8883870 - 8883820
Alignment:
| Q |
78 |
attgaggtaagtaaagtccgacaaattatttcaatcaaggatcgaactcat |
128 |
Q |
| |
|
||||| |||||| ||||| || ||| ||||||||||||||||||||||||| |
|
|
| T |
8883870 |
attgacgtaagtcaagtctgataaactatttcaatcaaggatcgaactcat |
8883820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 8880154 - 8880122
Alignment:
| Q |
22 |
tcgtggttctccttttcgtttatttgtttcctt |
54 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
8880154 |
tcgtggttctccttttcgtttatttatttcctt |
8880122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University