View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8286_low_23 (Length: 201)
Name: NF8286_low_23
Description: NF8286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8286_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 42716937 - 42717102
Alignment:
| Q |
18 |
ctgtgaacacccatggttccaagttggatacagtactaggagaaggtcctgaatttcctccagcagccacaacaatgatgttattggcaactgcatggaa |
117 |
Q |
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| T |
42716937 |
ctgtaaacacccatggttccaagttggatacagtactaggagcaggtcctgaatttcctccagcagccacaacaattatgttattggcaactgcatggaa |
42717036 |
T |
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| Q |
118 |
agaccctatggaaatactgctatcgtaaaattcaacaggaaaatcaccacccaaagacactgaaag |
183 |
Q |
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| T |
42717037 |
agaccctatggaaatactgctatcgtaaaattcaacaggaaaatcaccacccaaagacactgaaag |
42717102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 32 - 183
Target Start/End: Complemental strand, 42734934 - 42734783
Alignment:
| Q |
32 |
ggttccaagttggatacagtactaggagaaggtcctgaatttcctccagcagccacaacaatgatgttattggcaactgcatggaaagaccctatggaaa |
131 |
Q |
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| T |
42734934 |
ggttccatgtttgctacagtgttagaagaaggtcctgaattacctccagaagccacaacaattatgttgttggcaactgcatggaaagaccctatggaaa |
42734835 |
T |
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| Q |
132 |
tactgctatcgtaaaattcaacaggaaaatcaccacccaaagacactgaaag |
183 |
Q |
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| T |
42734834 |
tactgctatcgtgaaattcaacaggaaaatcaccactcaaagacactgaaag |
42734783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 32 - 183
Target Start/End: Original strand, 42743576 - 42743727
Alignment:
| Q |
32 |
ggttccaagttggatacagtactaggagaaggtcctgaatttcctccagcagccacaacaatgatgttattggcaactgcatggaaagaccctatggaaa |
131 |
Q |
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| T |
42743576 |
ggttccaggtttgctacagtgttaggagaaggtcctgaatttcctccagcagccacaacaatgatgttgttggcaactgcatggaaagaccctatggaaa |
42743675 |
T |
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| Q |
132 |
tactgctatcgtaaaattcaacaggaaaatcaccacccaaagacactgaaag |
183 |
Q |
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| T |
42743676 |
tactgctattgtgaaattcaacaggaatatttctacccaaagacactgaaag |
42743727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 32 - 183
Target Start/End: Original strand, 42752935 - 42753086
Alignment:
| Q |
32 |
ggttccaagttggatacagtactaggagaaggtcctgaatttcctccagcagccacaacaatgatgttattggcaactgcatggaaagaccctatggaaa |
131 |
Q |
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| T |
42752935 |
ggttccaggtttgctacagtgttaggagaaggtcctgaatttcctccagcagccacaacaatgatgttgttggcaactgcatggaaagaccctatggaaa |
42753034 |
T |
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| Q |
132 |
tactgctatcgtaaaattcaacaggaaaatcaccacccaaagacactgaaag |
183 |
Q |
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| T |
42753035 |
tactgctattgtgaaattcaacaggaatatttctacccaaagacactgaaag |
42753086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 42762557 - 42762661
Alignment:
| Q |
32 |
ggttccaagttggatacagtactaggagaaggtcctgaatttcctccagcagccacaacaatgatgttattggcaactgcatggaaagaccctatggaaa |
131 |
Q |
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| T |
42762557 |
ggttccaagttggatacagtactaggaacaggtcctgaattacctccagaagccacaacaatgatgttgttggcaactgcatgaaaagatcctatggaaa |
42762656 |
T |
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| Q |
132 |
tactg |
136 |
Q |
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||||| |
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| T |
42762657 |
tactg |
42762661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 42769506 - 42769552
Alignment:
| Q |
104 |
gcaactgcatggaaagaccctatggaaatactgctatcgtaaaattc |
150 |
Q |
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| T |
42769506 |
gcaactgcatggaaagaccctatagcaatactgctttcataaaattc |
42769552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 32 - 184
Target Start/End: Complemental strand, 23040898 - 23040746
Alignment:
| Q |
32 |
ggttccaagttggatacagtactaggagaaggtcctgaatttcctccagcagccacaacaatgatgttattggcaactgcatggaaagaccctatggaaa |
131 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23040898 |
ggttccaagttggatacagtactaggatcaggtcctgaatttcctccaccagacacaacaatgatgttgttggcaactgcatggaaagaccctatggaaa |
23040799 |
T |
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| Q |
132 |
tactgctatcgtaaaattcaacaggaaaatcaccacccaaagacactgaaagt |
184 |
Q |
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| T |
23040798 |
tactgctattgtgaaattcaacaggaaaatttctacccaaagacactgaaagt |
23040746 |
T |
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