View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8286_low_3 (Length: 559)

Name: NF8286_low_3
Description: NF8286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8286_low_3
NF8286_low_3
[»] chr5 (14 HSPs)
chr5 (1-543)||(26411172-26411714)
chr5 (262-425)||(25513771-25513934)
chr5 (262-402)||(8777302-8777442)
chr5 (235-425)||(22616494-22616677)
chr5 (220-372)||(25653633-25653783)
chr5 (235-422)||(13887240-13887425)
chr5 (235-366)||(41417443-41417572)
chr5 (235-373)||(36055738-36055874)
chr5 (235-368)||(31878436-31878567)
chr5 (262-424)||(10237415-10237573)
chr5 (218-372)||(12081114-12081266)
chr5 (220-350)||(10053294-10053422)
chr5 (235-324)||(33163612-33163699)
chr5 (220-321)||(13380599-13380698)
[»] chr3 (22 HSPs)
chr3 (2-141)||(11019197-11019337)
chr3 (135-284)||(11018554-11018704)
chr3 (220-424)||(54606703-54606905)
chr3 (297-422)||(5124671-5124796)
chr3 (208-412)||(48155048-48155252)
chr3 (274-381)||(11018400-11018507)
chr3 (235-373)||(44880839-44880974)
chr3 (235-426)||(49359492-49359677)
chr3 (235-422)||(38392492-38392673)
chr3 (278-392)||(29895893-29896007)
chr3 (268-373)||(40640529-40640634)
chr3 (281-422)||(13006902-13007043)
chr3 (262-360)||(53811865-53811963)
chr3 (235-366)||(7568583-7568712)
chr3 (235-322)||(7758287-7758372)
chr3 (299-367)||(18272150-18272218)
chr3 (281-425)||(42665445-42665589)
chr3 (235-373)||(19606778-19606914)
chr3 (303-367)||(45879428-45879492)
chr3 (217-344)||(4556622-4556749)
chr3 (220-372)||(43485360-43485510)
chr3 (335-425)||(47930628-47930714)
[»] chr6 (7 HSPs)
chr6 (208-412)||(4488417-4488621)
chr6 (235-373)||(11084018-11084152)
chr6 (235-425)||(26301789-26301971)
chr6 (262-422)||(25440961-25441121)
chr6 (236-373)||(19631797-19631932)
chr6 (235-344)||(34993908-34994015)
chr6 (309-366)||(4102862-4102919)
[»] chr2 (18 HSPs)
chr2 (262-422)||(58025-58185)
chr2 (235-423)||(41643874-41644056)
chr2 (262-425)||(43446347-43446510)
chr2 (208-388)||(32651870-32652047)
chr2 (240-373)||(6177823-6177954)
chr2 (235-425)||(41713164-41713346)
chr2 (262-403)||(7553372-7553513)
chr2 (305-373)||(18947530-18947598)
chr2 (235-425)||(34441787-34441969)
chr2 (235-368)||(15650901-15651032)
chr2 (236-333)||(40913164-40913259)
chr2 (235-367)||(27138885-27139014)
chr2 (235-424)||(42005390-42005571)
chr2 (239-403)||(6348736-6348900)
chr2 (235-373)||(19073406-19073542)
chr2 (302-373)||(18779330-18779401)
chr2 (311-373)||(18059300-18059362)
chr2 (235-372)||(30844897-30845031)
[»] chr7 (10 HSPs)
chr7 (235-373)||(22955176-22955312)
chr7 (235-373)||(37854160-37854294)
chr7 (235-426)||(8133423-8133610)
chr7 (261-392)||(47190088-47190219)
chr7 (235-366)||(4618619-4618748)
chr7 (297-425)||(4902340-4902464)
chr7 (235-373)||(7742967-7743103)
chr7 (240-373)||(23402240-23402371)
chr7 (235-373)||(5781566-5781700)
chr7 (262-319)||(8758392-8758449)
[»] chr8 (6 HSPs)
chr8 (235-425)||(1879090-1879278)
chr8 (235-425)||(1835249-1835437)
chr8 (235-425)||(4108778-4108960)
chr8 (262-423)||(35735869-35736030)
chr8 (233-365)||(3038462-3038592)
chr8 (311-412)||(23176703-23176798)
[»] chr4 (14 HSPs)
chr4 (208-422)||(5915633-5915844)
chr4 (262-426)||(37793379-37793543)
chr4 (262-392)||(5812596-5812726)
chr4 (215-355)||(22729777-22729914)
chr4 (235-355)||(1012362-1012481)
chr4 (217-372)||(33036048-33036200)
chr4 (302-425)||(2704512-2704629)
chr4 (263-366)||(22756821-22756924)
chr4 (304-373)||(9743636-9743705)
chr4 (235-339)||(2570560-2570662)
chr4 (380-429)||(53124283-53124332)
chr4 (236-367)||(54995664-54995793)
chr4 (301-372)||(51204632-51204703)
chr4 (380-425)||(3042611-3042656)
[»] chr1 (10 HSPs)
chr1 (235-392)||(21263909-21264064)
chr1 (220-392)||(421422-421592)
chr1 (235-373)||(10758164-10758300)
chr1 (235-366)||(27118385-27118514)
chr1 (262-373)||(16127568-16127679)
chr1 (235-373)||(13876783-13876919)
chr1 (235-367)||(15964154-15964284)
chr1 (274-364)||(28012123-28012213)
chr1 (235-362)||(16132534-16132659)
chr1 (297-368)||(17695937-17696008)
[»] scaffold0312 (1 HSPs)
scaffold0312 (220-392)||(8980-9150)
[»] scaffold0200 (1 HSPs)
scaffold0200 (240-373)||(24686-24817)
[»] scaffold0050 (1 HSPs)
scaffold0050 (235-366)||(5645-5774)


Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Complemental strand, 26411714 - 26411172
Alignment:
Q  1 acgagaacctaagaagaaaacacattaaactgtttcaattaaacataagaattttgaagcatgaactttatatgaaaaactacaagctaaccgtaaaaaa 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26411714 acgagaaactaagaagaaaacacattaaactgtttcaattaaacataagaattttgaagcatgaactttatatgaaaaactacaggctaaccgtaaaaaa 26411615  T
Q  101 catgacaattatcaagaaagaaaatctgaagtaccttcgggtggaatggagaattgcaaaagcatggagggagcgtgtgatgataaaagaaaaatagaaa 200  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |    
T  26411614 catgacaattatcaagaaagaaaatctaaagtaccttcgagtggaatggagaattgcaaaagcagggagggagcgtgtggtgataaaagaaaaatagaga 26411515  T
Q  201 gcgattgttggcaaaaaataataataataatgaagtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatg 300  Q
    |||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||  |||||||||||| |||||| ||||||||||||||  ||||    
T  26411514 gcgattgttggcaaaaaa-ataaataataatgaagtttaattttgatttaattaggga--tacaattgcaataagtaaatatatagtggcatactgtatg 26411418  T
Q  301 agcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaatatcattt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||| ||||||     
T  26411417 agcaaatgtacaatacaccatataatttgacgtgacatgtattaaatacataaatattcaatgattggtcattctaatgacttcaccaaaaaaatcattc 26411318  T
Q  401 taatgatttcacaatataattttccaattcattaatgcctaaacttcaactaacca--atgttt-ttcatagcatacttatgtatatttttcatatttat 497  Q
    |||||| ||||| ||| ||||||||||||||||||||||| |||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||    
T  26411317 taatgacttcaccatagaattttccaattcattaatgcctcaacttcaactaaccaatatgtttattcatagcatacttatgtatatttttcatatttat 26411218  T
Q  498 ttgcgtctgttaggcttttgaagaagaggaatgctacccaaagttg 543  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  26411217 ttgcgtccgttaggcttttgaagaagaggaatgctatccacagttg 26411172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 262 - 425
Target Start/End: Complemental strand, 25513934 - 25513771
Alignment:
Q  262 acaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaa 361  Q
    ||||||||||| |||||||||||||||| | |||||||||||||||||||||| | |  || ||||||| ||||| ||||||| ||||| |||||    |    
T  25513934 acaattgcaataagtaaaaatatagtggtacaccatatgagcaaatgtacaatgcgcagtaaaatttgatgtgacttgtattaaatacacaaatgcatta 25513835  T
Q  362 tgattgatcattctaatgacttcaccaaaaatatcattttaatgatttcacaatataattttcc 425  Q
    |||||| |||||||||||||||||||| ||| |||||||||| || ||||| ||| ||||||||    
T  25513834 tgattggtcattctaatgacttcaccagaaaaatcattttaacgacttcaccatagaattttcc 25513771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 262 - 402
Target Start/End: Original strand, 8777302 - 8777442
Alignment:
Q  262 acaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaa 361  Q
    ||||||||||| |||||||||||||||| | |||||||||||||||||||||| |||  || ||||||| ||| |||| |||| ||||| ||||||   |    
T  8777302 acaattgcaataagtaaaaatatagtggtacaccatatgagcaaatgtacaatgcacactaaaatttgatgtggcatgcattaaatacacaaatgtatta 8777401  T
Q  362 tgattgatcattctaatgacttcaccaaaaatatcatttta 402  Q
    |||||| ||||||||||||||| ||||||||  ||||||||    
T  8777402 tgattggtcattctaatgactttaccaaaaaagtcatttta 8777442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 235 - 425
Target Start/End: Complemental strand, 22616677 - 22616494
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| |||||   ||||||||||| |||||| ||||| || || ||| |||| |||||||| |||||||||||||||| |||||||    
T  22616677 gtttaattttgatttaatcagggac--acaattgcaataagtaaagatataatgacacaccttatgggcaaatgtccaatacaccatataatatgacgtg 22616580  T
Q  335 acatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaatatcattttaatgatttcacaatataattttcc 425  Q
    ||||| |||| |||||| |||| ||||||||||  ||||    | ||||||||| |||  ||||||| |||| ||||| ||| ||||||||    
T  22616579 acatggattaaatacat-aatgctcaatgattggccatt----taacttcaccagaaaagtcattttcatgacttcaccatagaattttcc 22616494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 220 - 372
Target Start/End: Complemental strand, 25653783 - 25653633
Alignment:
Q  220 aataataataatgaagtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacacc 319  Q
    |||||||||||  | |||||||||||||||||| |||||  ||   ||||||| |||||| ||||| || || ||| ||||||||||||| |||||||||    
T  25653783 aataataataaaaatgtttaattttgatttaatcagggaaatag--ttgcaataagtaaagatataatgacacaccttatgagcaaatgtgcaatacacc 25653686  T
Q  320 atataatttgacgtgacatgtattatatacataaatgttcaatgattgatcat 372  Q
    ||| ||| |||||||| ||| |||| ||||| ||||  |||||||||||||||    
T  25653685 atacaatctgacgtgatatgaattaaatacacaaatactcaatgattgatcat 25653633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 235 - 422
Target Start/End: Complemental strand, 13887425 - 13887240
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| | |||   ||||||||||| |||||||||||| ||| | |||||||||||||||||||||| | |  || ||||||| |||    
T  13887425 gtttaattttgatttaatcaaggac--acaattgcaataagtaaaaatataatggtacaccatatgagcaaatgtacaatgcgcagtaaaatttgatgtg 13887328  T
Q  335 acatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaatatcattttaatgatttcacaatataattt 422  Q
    ||||| |||| ||||| ||||     ||||||| ||| | |||| ||||||||| ||| |||||||||| || ||||| ||| |||||    
T  13887327 acatgcattaaatacacaaataaattatgattggtcaatttaatcacttcaccagaaaaatcattttaacgacttcaccataaaattt 13887240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 235 - 366
Target Start/End: Original strand, 41417443 - 41417572
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    ||||||||||||||||||  ||||   ||||||||||| |||||| ||| | || || ||| ||||||||||| | |||||||||||||||| |||| ||    
T  41417443 gtttaattttgatttaatctgggac--acaattgcaataagtaaagataaaatgacacaccttatgagcaaatttgcaatacaccatataatctgacatg 41417540  T
Q  335 acatgtattatatacataaatgttcaatgatt 366  Q
    | ||  |||| ||||| |||||||||||||||    
T  41417541 atataaattaaatacacaaatgttcaatgatt 41417572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 235 - 373
Target Start/End: Original strand, 36055738 - 36055874
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    ||||||||||||||||||  ||||   ||||||| ||| |||||| ||||| || || ||| ||||||||||||| ||||||||||| |||| ||| | |    
T  36055738 gtttaattttgatttaatcggggac--acaattgtaataagtaaagatataatgacacaccttatgagcaaatgtgcaatacaccatgtaatctgatgcg 36055835  T
Q  335 acatgtattatatacataaatgttcaatgattgatcatt 373  Q
    ||||| |||| || || ||||| ||||||||||| ||||    
T  36055836 acatgaattaaattcacaaatgctcaatgattgaccatt 36055874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 368
Target Start/End: Complemental strand, 31878567 - 31878436
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| |||||   |||||||  || |||||| ||||| || || ||| |||   ||||||| |||||||||||||||| |||||||    
T  31878567 gtttaattttgatttaatcagggac--acaattgtcataagtaaagatataatgacacaccttatagacaaatgtgcaatacaccatataatctgacgtg 31878470  T
Q  335 acatgtattatatacataaatgttcaatgattga 368  Q
    ||||| |||| ||||| ||||| | |||||||||    
T  31878469 acatgaattaaatacacaaatgcttaatgattga 31878436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 262 - 424
Target Start/End: Complemental strand, 10237573 - 10237415
Alignment:
Q  262 acaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaa 361  Q
    ||||||| ||| |||||| ||||| ||  ||||| ||||  ||||||  |||||||||||||||| |||||||| ||| |||| ||||| ||||| ||||    
T  10237573 acaattggaataagtaaatatataatgaaataccttatggacaaatgcgcaatacaccatataatctgacgtgaaatgaattaaatacacaaatgctcaa 10237474  T
Q  362 tgattgatcattctaatgacttcaccaaaaatatcattttaatgatttcacaatataattttc 424  Q
    ||||||| ||||    | ||||||| | |||  ||||||| |||| ||||||||| |||||||    
T  10237473 tgattgaccatt----taacttcactagaaaagtcattttcatgacttcacaatagaattttc 10237415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 218 - 372
Target Start/End: Original strand, 12081114 - 12081266
Alignment:
Q  218 ataataataataatgaagtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaataca 317  Q
    |||||||||||||  | |||||||||||||||||| |||||  |  ||||||||| |||||| |||||  | || ||| ||| |||||||||  ||||||    
T  12081114 ataataataataaaaatgtttaattttgatttaatcagggactt--aattgcaataagtaaagatataaggacacaccttataagcaaatgtgtaataca 12081211  T
Q  318 ccatataat-ttgacgtgacatgtattatatacataaatgttcaatgattgatcat 372  Q
    ||||||||| |||| | | |||| ||||||||||  ||||| ||||||||||||||    
T  12081212 ccatataatcttgatgcgtcatggattatataca-caatgtccaatgattgatcat 12081266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 350
Target Start/End: Complemental strand, 10053422 - 10053294
Alignment:
Q  220 aataataataatgaagtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacacc 319  Q
    |||||||||||  |  ||||||||||||||||| |||||    |||||||||| |||||| ||||| || || ||| ||||||||||||| ||||||||     
T  10053422 aataataataaaaatatttaattttgatttaatcaggga--ctcaattgcaataagtaaagatataatgacacaccttatgagcaaatgtgcaatacacg 10053325  T
Q  320 atataatttgacgtgacatgtattatataca 350  Q
    |||||||  ||||| ||||| |||| |||||    
T  10053324 atataatccgacgtaacatggattaaataca 10053294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 324
Target Start/End: Complemental strand, 33163699 - 33163612
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatata 324  Q
    |||||||||||||||||| |||||   ||||||||||| |||||| ||||| ||||| ||| ||||   |||||| ||||||||||||||    
T  33163699 gtttaattttgatttaatcagggac--acaattgcaataagtaaagatataatggcacaccttatggataaatgtgcaatacaccatata 33163612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 321
Target Start/End: Complemental strand, 13380698 - 13380599
Alignment:
Q  220 aataataataatgaagtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacacc 319  Q
    |||||||||||  | |||||||||||||||||| |||||  |||||||||||| | |||| ||||| || ||||   |||| | |||||| |||||||||    
T  13380698 aataataataaaaatgtttaattttgatttaatcaggga--tacaattgcaataaataaagatataatgacatattttatgggtaaatgtgcaatacacc 13380601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 6e-57; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 11019337 - 11019197
Alignment:
Q  2 cgagaacctaagaagaaaacacattaaactgtttcaattaaacataagaattttgaagcatgaactttatatgaaaaactacaagctaaccgtaa-aaaa 100  Q
    |||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11019337 cgagaaactaagaagaaaacacattaaactgtttcgattaaacatacgaattttgaagcatgaactttatatgaaaaactacaagctaaccgtaaaaaaa 11019238  T
Q  101 catgacaattatcaagaaagaaaatctgaagtaccttcggg 141  Q
    ||||||||||||  |||||||||||||||||||||||||||    
T  11019237 catgacaattattgagaaagaaaatctgaagtaccttcggg 11019197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 135 - 284
Target Start/End: Complemental strand, 11018704 - 11018554
Alignment:
Q  135 cttcgggtggaatggagaattgcaaaagcatggagggagcgtgtgatgataaaagaaaaatagaaagcgattgttggcaaaaaa---taataataataat 231  Q
    ||||| |||||||||||||||||||||||| ||||| ||||||  ||||||||| ||||||||| || ||||||||||||||||   ||||||||||| |    
T  11018704 cttcgtgtggaatggagaattgcaaaagcagggaggtagcgtgcaatgataaaaaaaaaatagagagtgattgttggcaaaaaaaagtaataataatatt 11018605  T
Q  232 gaagtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatat 284  Q
     || |||||||||||||||||||||||  |||||||||||| |||||||||||    
T  11018604 aaaatttaattttgatttaattaggga--tacaattgcaataagtaaaaatat 11018554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 220 - 424
Target Start/End: Complemental strand, 54606905 - 54606703
Alignment:
Q  220 aataataataatgaagtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacacc 319  Q
    |||||||||||  | |||||||||| ||||||| | ||  | ||||||||||| |||||||||||||  ||| ||| |||||| |||||| |||||||||    
T  54606905 aataataataaaaatgtttaattttaatttaatcaagg--gcacaattgcaataagtaaaaatatagcagcacaccgtatgagtaaatgtgcaatacacc 54606808  T
Q  320 atataatttgacgtgacatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaatatcattttaatgatttcacaatataa 419  Q
     ||| ||||||| ||||||  |||| ||||| |||||||||||||||| ||| ||||||||||||| ||||||  |||||||||| |||| || ||| ||    
T  54606807 gtatgatttgacatgacatacattaaatacacaaatgttcaatgattggtcaatctaatgacttcaacaaaaaagtcattttaataattttaccatagaa 54606708  T
Q  420 ttttc 424  Q
    |||||    
T  54606707 ttttc 54606703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 297 - 422
Target Start/End: Complemental strand, 5124796 - 5124671
Alignment:
Q  297 tatgagcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaatatc 396  Q
    |||||| |||||| ||||||||| ||||||||||| ||||||  |||| ||||| |||||||||||||||| ||| ||||||||||||||||||||  ||    
T  5124796 tatgagtaaatgtgcaatacaccgtataatttgacatgacatacattaaatacacaaatgttcaatgattggtcaatctaatgacttcaccaaaaaagtc 5124697  T
Q  397 attttaatgatttcacaatataattt 422  Q
    |||||||||||||||| ||| |||||    
T  5124696 attttaatgatttcaccatagaattt 5124671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 208 - 412
Target Start/End: Original strand, 48155048 - 48155252
Alignment:
Q  208 ttggcaaaaaataataataataatgaa--gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaa 305  Q
    |||| ||||||||||||||||||  ||  |||||||||||||||||| | |||   ||||||||||  |||||||||||||||| | |||||||||||||    
T  48155048 ttggtaaaaaataataataataaaaaaatgtttaattttgatttaatcaaggac--acaattgcaacaagtaaaaatatagtggtacaccatatgagcaa 48155145  T
Q  306 atgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaatatcattttaatg 405  Q
    ||||||||| | |  || ||||||| |||||||| |||| ||||| | ||||   ||||| | ||||||||||||||||||||||||  ||||||||| |    
T  48155146 atgtacaatgcgcactaaaatttgatgtgacatgcattaaatacacagatgtattatgatcggtcattctaatgacttcaccaaaaaagtcattttaacg 48155245  T
Q  406 atttcac 412  Q
    | |||||    
T  48155246 acttcac 48155252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 274 - 381
Target Start/End: Complemental strand, 11018507 - 11018400
Alignment:
Q  274 agtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaatgattgatcatt 373  Q
    |||||||||||||||||| ||| |||||||||||||||| ||||| |||||||| ||||||| |||||||| ||||||||||||  |||||||| |||||    
T  11018507 agtaaaaatatagtggcacaccgtatgagcaaatgtacagtacacaatataattggacgtgatatgtattaaatacataaatgtaaaatgattggtcatt 11018408  T
Q  374 ctaatgac 381  Q
    ||||||||    
T  11018407 ctaatgac 11018400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 373
Target Start/End: Complemental strand, 44880974 - 44880839
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| |||||   ||||||| ||| |||||| ||||| || ||  || ||||||||||||| ||||||||||||| || |||||||    
T  44880974 gtttaattttgatttaatcagggac--acaattgtaataagtaaagatataatgacac-ccttatgagcaaatgtgcaatacaccatattatctgacgtg 44880878  T
Q  335 acatgtattatatacataaatgttcaatgattgatcatt 373  Q
    ||||| |||| ||||||||||||||||||||||| ||||    
T  44880877 acatggattaaatacataaatgttcaatgattgaccatt 44880839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 426
Target Start/End: Original strand, 49359492 - 49359677
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| |||||   ||||||||| | |||||| ||||| || || ||| ||||||||||||| ||||||| |||||||| |||||||    
T  49359492 gtttaattttgatttaatcagggac--acaattgcattaagtaaagatataatgacacaccttatgagcaaatgtgcaatacatcatataatatgacgtg 49359589  T
Q  335 acatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaatatcattttaatgatttcacaatataattttcca 426  Q
     |||| |||| ||||| ||||||||||||||||  ||||    | ||||||| |||||  ||||||| |||| ||||| ||| |||||||||    
T  49359590 tcatggattaaatacacaaatgttcaatgattggccatt----taacttcacaaaaaaagtcattttcatgacttcaccatagaattttcca 49359677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 235 - 422
Target Start/End: Original strand, 38392492 - 38392673
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| |||||   ||||||||||| |||||| ||||| || || ||  |||| |||||||| ||||||| |||||||| || | ||    
T  38392492 gtttaattttgatttaatcagggac--acaattgcaataagtaaatatataatgacacacattatgggcaaatgtgcaatacatcatataatctgtcatg 38392589  T
Q  335 acatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaatatcattttaatgatttcacaatataattt 422  Q
    ||||| |||| ||||| ||||||||||||| ||| ||||    | |||||||||||||  ||||| | |||| ||||| |||||||||    
T  38392590 acatggattaaatacacaaatgttcaatgactgaccatt----taacttcaccaaaaaagtcattctcatgacttcaccatataattt 38392673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 278 - 392
Target Start/End: Complemental strand, 29896007 - 29895893
Alignment:
Q  278 aaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaatgattgatcattctaa 377  Q
    |||||||||||| | ||| |||||||||||||||| |||||  |||||||||| |||||||| |||| ||||| | ||||   ||||||| |||||||||    
T  29896007 aaaatatagtggtacaccgtatgagcaaatgtacagtacacggtataatttgatgtgacatgcattaaatacacagatgtattatgattggtcattctaa 29895908  T
Q  378 tgacttcaccaaaaa 392  Q
    | |||||||||||||    
T  29895907 taacttcaccaaaaa 29895893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 268 - 373
Target Start/End: Original strand, 40640529 - 40640634
Alignment:
Q  268 gcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaatgattg 367  Q
    ||||| |||||||||||| || || | | |||| |||||||| |||||||||||||||| |||||||||||| |||| ||||| ||||| ||||||||||    
T  40640529 gcaataagtaaaaatataatgacacatcttatgggcaaatgtgcaatacaccatataatatgacgtgacatggattaaatacacaaatgctcaatgattg 40640628  T
Q  368 atcatt 373  Q
    | ||||    
T  40640629 accatt 40640634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 281 - 422
Target Start/End: Complemental strand, 13007043 - 13006902
Alignment:
Q  281 atatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaatgattgatcattctaatga 380  Q
    ||||||||| | |||||||||||||||||||||| | | ||| ||||||| ||| |||| |||| ||||| |||||    ||||||| ||| |||||| |    
T  13007043 atatagtggtacaccatatgagcaaatgtacaatgcgcaataaaatttgatgtggcatgcattaaatacacaaatgaattatgattggtcaatctaataa 13006944  T
Q  381 cttcaccaaaaatatcattttaatgatttcacaatataattt 422  Q
    |||||| |||||  ||||||||| || ||||| |||||||||    
T  13006943 cttcactaaaaaagtcattttaacgacttcaccatataattt 13006902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 262 - 360
Target Start/End: Original strand, 53811865 - 53811963
Alignment:
Q  262 acaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttca 360  Q
    ||||||||| | |||||| ||||| || || ||| ||||  |||||||  ||||||||||||||| |||||||||||| |||| |||||||||||||||    
T  53811865 acaattgcattaagtaaagatataatgacacaccttatgtacaaatgtggaatacaccatataatctgacgtgacatggattaaatacataaatgttca 53811963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 235 - 366
Target Start/End: Original strand, 7568583 - 7568712
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| || ||   ||||||| ||| |||||| ||||| || || ||  |||| |||||||| ||||||  |||||||| |||||||    
T  7568583 gtttaattttgatttaatcagagac--acaattgtaataagtaaagatataatgacacactttatgtgcaaatgtgcaatactgcatataatctgacgtg 7568680  T
Q  335 acatgtattatatacataaatgttcaatgatt 366  Q
    ||||| |||| ||||| ||||| |||||||||    
T  7568681 acatgaattaaatacacaaatgctcaatgatt 7568712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 235 - 322
Target Start/End: Original strand, 7758287 - 7758372
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccata 322  Q
    ||||||||||||||||||||||||   ||||||||||| |||||| ||||| || |  ||| |||| |||||||||||||||||||||    
T  7758287 gtttaattttgatttaattagggac--acaattgcaataagtaaagatataatgacgcaccttatgggcaaatgtacaatacaccata 7758372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 299 - 367
Target Start/End: Original strand, 18272150 - 18272218
Alignment:
Q  299 tgagcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaatgattg 367  Q
    ||||||||||| |||||||||||||||| |||| ||| ||| |||| ||||| ||||||||||||||||    
T  18272150 tgagcaaatgtgcaatacaccatataatctgacttgatatgaattaaatacacaaatgttcaatgattg 18272218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 281 - 425
Target Start/End: Original strand, 42665445 - 42665589
Alignment:
Q  281 atatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaatgattgatcattctaatga 380  Q
    ||||||||||| | ||||||||||||||| | |||||||  ||||||||||||| |||| |||| ||| | |||| ||||||||||| | |   || | |    
T  42665445 atatagtggcacatcatatgagcaaatgtgctatacaccccataatttgacgtgtcatgcattaaatatacaaatcttcaatgattggttaaaatattaa 42665544  T
Q  381 cttcaccaaaaatatcattttaatgatttcacaatataattttcc 425  Q
    |||||||||||| |||||| | || | ||||| ||| ||||||||    
T  42665545 cttcaccaaaaaaatcattatcataacttcaccatagaattttcc 42665589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 373
Target Start/End: Original strand, 19606778 - 19606914
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| |||||   || |||||||  |||||| ||||| || || ||| ||||   |||||| |||||||||||||||| |||||||    
T  19606778 gtttaattttgatttaataagggac--acgattgcaacaagtaaagatataatgacacaccttatggaaaaatgttcaatacaccatataatctgacgtg 19606875  T
Q  335 acatgtattatatacataaatgttcaatgattgatcatt 373  Q
    || || |||| ||||| ||||| ||||| |||| |||||    
T  19606876 acctgaattaaatacacaaatgctcaatcattggtcatt 19606914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 367
Target Start/End: Original strand, 45879428 - 45879492
Alignment:
Q  303 caaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaatgattg 367  Q
    ||||||| |||||||||||||||| ||||||| |||| |||| ||||| ||||| ||||||||||    
T  45879428 caaatgtgcaatacaccatataatctgacgtggcatggattaaatacacaaatgctcaatgattg 45879492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 344
Target Start/End: Complemental strand, 4556749 - 4556622
Alignment:
Q  217 aataataataataatgaa--gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaat 314  Q
    ||||||||||||||| ||  |||||||||| ||||||| ||  || ||  |||| ||| |||||| ||||| || || ||  ||||||||||||| ||||    
T  4556749 aataataataataataaaatgtttaattttaatttaatgagatattta--attgtaataagtaaagatataatgacacacattatgagcaaatgtgcaat 4556652  T
Q  315 acaccatataatttgacgtgacatgtatta 344  Q
    || ||||||||| |||||||||||| ||||    
T  4556651 acgccatataatctgacgtgacatgaatta 4556622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 372
Target Start/End: Complemental strand, 43485510 - 43485360
Alignment:
Q  220 aataataataatgaagtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacacc 319  Q
    |||||||||||  | |||||||||| ||||||| |||||    ||||| |||| |||||||||||| || || | | || | |||||| | |||| ||||    
T  43485510 aataataataaaaatgtttaattttaatttaatcagggact--caattacaataagtaaaaatataatgacacatcttaggggcaaatatgcaatgcacc 43485413  T
Q  320 atataatttgacgtgacatgtattatatacataaatgttcaatgattgatcat 372  Q
    ||||||| ||| ||| |||| |||| |||   |||||||||||||||| ||||    
T  43485412 atataatctgaagtggcatgaattaaatatgaaaatgttcaatgattggtcat 43485360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 425
Target Start/End: Original strand, 47930628 - 47930714
Alignment:
Q  335 acatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaatatcattttaatgatttcacaatataattttcc 425  Q
    ||||| |||| ||||| |||||||||||||||| |||||    | ||||||||| ||| |||||||| |||| ||||| ||| ||||||||    
T  47930628 acatggattaaatacacaaatgttcaatgattggtcatt----taacttcaccagaaaaatcattttcatgacttcaccatagaattttcc 47930714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 208 - 412
Target Start/End: Original strand, 4488417 - 4488621
Alignment:
Q  208 ttggcaaaaaataataataataatgaa--gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaa 305  Q
    |||| ||||||||||||||||||| ||  |||||||||||||||||| | | |   ||||||||||  |||||||||||||||| | |||||||||||||    
T  4488417 ttggtaaaaaataataataataataaaatgtttaattttgatttaatcaagaac--acaattgcaacaagtaaaaatatagtggtacaccatatgagcaa 4488514  T
Q  306 atgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaatatcattttaatg 405  Q
    ||||||||| | |  || ||||||| |||||||| |||| ||||| | ||||   ||||| | ||||||||||||||||||||||||  ||||||||| |    
T  4488515 atgtacaatgcgcactaaaatttgatgtgacatgcattaaatacacagatgtattatgatcggtcattctaatgacttcaccaaaaaagtcattttaacg 4488614  T
Q  406 atttcac 412  Q
    | |||||    
T  4488615 acttcac 4488621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 235 - 373
Target Start/End: Original strand, 11084018 - 11084152
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| || ||   ||||||||||| |||||| ||||| || || ||| |||| ||||||||  |||||||||||||||  ||||||    
T  11084018 gtttaattttgatttaatcagagac--acaattgcaataagtaaagatataatgacacaccttatgggcaaatgtgtaatacaccatataat--gacgtg 11084113  T
Q  335 acatgtattatatacataaatgttcaatgattgatcatt 373  Q
    ||||| |||| |||||||||| ||||||||||| |||||    
T  11084114 acatggattaaatacataaatattcaatgattggtcatt 11084152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 235 - 425
Target Start/End: Original strand, 26301789 - 26301971
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| |||||   ||||||||||| |||||| ||||| || || | | ||||   |||| | ||||||| ||||||||  ||||||    
T  26301789 gtttaattttgatttaatcagggac--acaattgcaataagtaaagatataatgacacatcttatggataaatatgcaatacatcatataat--gacgtg 26301884  T
Q  335 acatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaatatcattttaatgatttcacaatataattttcc 425  Q
    ||||| |||| |||||||||| ||||||||||| |||||    | ||||||| ||||| |||||||| |||| ||||| ||||||||||||    
T  26301885 acatgaattaaatacataaatattcaatgattggtcatt----taacttcacgaaaaaaatcatttttatgacttcaccatataattttcc 26301971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 262 - 422
Target Start/End: Complemental strand, 25441121 - 25440961
Alignment:
Q  262 acaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaa 361  Q
    ||||||||||| |||||||||||||||| | ||||||| |||||||||||||| | |  || ||||||| ||| |||| |||| ||||| | ||||   |    
T  25441121 acaattgcaataagtaaaaatatagtggtacaccatataagcaaatgtacaatgcgcactaaaatttgatgtggcatgaattaaatacacagatgtatta 25441022  T
Q  362 tgattgatcattctaatgacttcaccaaaaatatcattttaatgatttcacaatataattt 422  Q
    | |||| | |||||||||||||||||| |||  ||||||||| || ||||| ||| |||||    
T  25441021 taattggtaattctaatgacttcaccagaaaagtcattttaacgacttcaccatagaattt 25440961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 236 - 373
Target Start/End: Complemental strand, 19631932 - 19631797
Alignment:
Q  236 tttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtga 335  Q
    ||||||||||||||||| || ||   || |||||||| |||||| ||||| ||  | ||| |||  |||||||| |||||||||||||||| | ||||||    
T  19631932 tttaattttgatttaatcagagac--acgattgcaataagtaaagatataatgaaacaccttataggcaaatgtgcaatacaccatataatctaacgtga 19631835  T
Q  336 catgtattatatacataaatgttcaatgattgatcatt 373  Q
    |||| |||| ||||| |||||||||||||||| |||||    
T  19631834 catggattaaatacacaaatgttcaatgattggtcatt 19631797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 344
Target Start/End: Complemental strand, 34994015 - 34993908
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| | |||   ||||||| ||| |||||| ||||| |  |||||  ||||  ||||||| |||||||||||||||| ||| |||    
T  34994015 gtttaattttgatttaatcaaggac--acaattgtaataagtaaagatataataacatacattatggacaaatgtgcaatacaccatataatctgatgtg 34993918  T
Q  335 acatgtatta 344  Q
    ||||| ||||    
T  34993917 acatgaatta 34993908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 4102862 - 4102919
Alignment:
Q  309 tacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaatgatt 366  Q
    |||||||||||||||||| ||| ||| |||  |||| ||||| |||||||||||||||    
T  4102862 tacaatacaccatataatatgatgtggcatagattaaatacacaaatgttcaatgatt 4102919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 262 - 422
Target Start/End: Complemental strand, 58185 - 58025
Alignment:
Q  262 acaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaa 361  Q
    ||||||||||| ||||||||||| |||||| ||| ||||| ||||||| ||||||||||||||||||||  ||||||| |||| ||||| | ||||| ||    
T  58185 acaattgcaataagtaaaaatattgtggcacaccgtatgaacaaatgtgcaatacaccatataatttgatctgacatgaattaaatacagatatgttaaa 58086  T
Q  362 tgattgatcattctaatgacttcaccaaaaatatcattttaatgatttcacaatataattt 422  Q
    |||||| ||||||| ||||||||| ||||||  ||||| | || ||||||| ||| |||||    
T  58085 tgattggtcattctcatgacttcatcaaaaaagtcattctcataatttcaccatagaattt 58025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 235 - 423
Target Start/End: Complemental strand, 41644056 - 41643874
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| ||||||  ||||||||||| |||||| ||||| || || ||| ||||| ||||||| |||||||||||||||| |||||||    
T  41644056 gtttaattttgatttaatcagggat--acaattgcaataagtaaagatataatgacacaccttatgatcaaatgtgcaatacaccatataatctgacgtg 41643959  T
Q  335 acatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaatatcattttaatgatttcacaatataatttt 423  Q
    ||||| |||| ||||| ||||| ||||||||||| ||||    | |||||||||||||  ||||| | |||| ||||| ||| ||||||    
T  41643958 acatgaattaaatacacaaatgctcaatgattgaccatt----taacttcaccaaaaaagtcattatcatgacttcaccatagaatttt 41643874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 262 - 425
Target Start/End: Original strand, 43446347 - 43446510
Alignment:
Q  262 acaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaa 361  Q
    ||||||| ||| |||||| |||||||| |||||| |||||||||| || ||| ||||||||||||||||||||  ||| |||| ||||  ||||||||||    
T  43446347 acaattgtaataagtaaagatatagtgacataccctatgagcaaacgtgcaacacaccatataatttgacgtggtatgcattagatacgcaaatgttcaa 43446446  T
Q  362 tgattgatcattctaatgacttcaccaaaaatatcattttaatgatttcacaatataattttcc 425  Q
    |||||||||||||| || |||||||| ||||  ||||| | |||| ||||| ||| ||||||||    
T  43446447 tgattgatcattctcataacttcaccgaaaaagtcattctcatgacttcaccatagaattttcc 43446510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 208 - 388
Target Start/End: Complemental strand, 32652047 - 32651870
Alignment:
Q  208 ttggcaaaaaataataataataatgaagtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaat 307  Q
    |||| ||||||||||||||| ||  | |||||||||||||||||| | |||   ||||||||||  |||||||||||||||| | |||||||||||||||    
T  32652047 ttggtaaaaaataataataaaaaa-atgtttaattttgatttaatcaaggac--acaattgcaacaagtaaaaatatagtggtacaccatatgagcaaat 32651951  T
Q  308 gtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaatgattgatcattctaatgacttcacca 388  Q
    ||||||| | |  || ||||||| |||||||| |||| ||||| | ||||   ||||||||||||||||||||||||||||    
T  32651950 gtacaatgcgcactaaaatttgatgtgacatgcattaaatacacagatgtattatgattgatcattctaatgacttcacca 32651870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 240 - 373
Target Start/End: Complemental strand, 6177954 - 6177823
Alignment:
Q  240 attttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtgacatg 339  Q
    ||||||||||||| |||||   ||||||| ||| |||||| ||||| || |||||| |||| |||||||  |||||||||||||||| ||||||||||||    
T  6177954 attttgatttaatcagggac--acaattggaataagtaaatatataatgacataccttatgggcaaatgcgcaatacaccatataatctgacgtgacatg 6177857  T
Q  340 tattatatacataaatgttcaatgattgatcatt 373  Q
     |||| ||||| ||||| ||||||||||| ||||    
T  6177856 aattaaatacacaaatgctcaatgattgaccatt 6177823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 235 - 425
Target Start/End: Complemental strand, 41713346 - 41713164
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    ||||||||||||||||||||||||   ||||||| ||| |||| | ||||| || || | | |||| ||||||||  || ||||||||||||  ||||||    
T  41713346 gtttaattttgatttaattagggaa--acaattgtaataagtatacatataatgacacatcttatgggcaaatgtgtaacacaccatataat--gacgtg 41713251  T
Q  335 acatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaatatcattttaatgatttcacaatataattttcc 425  Q
    ||||| |||| |||||||||| ||||||||||| ||||| ||||   ||||||| ||| |||||||| |||||||||| ||| ||||||||    
T  41713250 acatgaattaaatacataaatattcaatgattggtcatt-taat---ttcaccagaaaaatcattttcatgatttcactatagaattttcc 41713164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 262 - 403
Target Start/End: Complemental strand, 7553513 - 7553372
Alignment:
Q  262 acaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaa 361  Q
    ||||||||||| |||||||||||||||  | |||||||||  ||| ||||||| ||| ||||||||| | ||| |||  |||| ||||| ||||||   |    
T  7553513 acaattgcaataagtaaaaatatagtgatacaccatatgaataaaagtacaatgcacaatataatttaatgtggcattcattaaatacacaaatgtatta 7553414  T
Q  362 tgattgatcattctaatgacttcaccaaaaatatcattttaa 403  Q
    |||||| ||||||||||||||| ||||||||  |||||||||    
T  7553413 tgattggtcattctaatgactttaccaaaaaagtcattttaa 7553372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 305 - 373
Target Start/End: Original strand, 18947530 - 18947598
Alignment:
Q  305 aatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaatgattgatcatt 373  Q
    |||||||||||||||||||||| |||||||||||| |||| ||||| ||||||||||||||||| ||||    
T  18947530 aatgtacaatacaccatataatctgacgtgacatggattaaatacacaaatgttcaatgattgaccatt 18947598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 235 - 425
Target Start/End: Original strand, 34441787 - 34441969
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| |||||   ||||||||||| |||||| |||||  | || | | |||| |||||||| |||||||||||||||  |||||||    
T  34441787 gtttaattttgatttaatcagggac--acaattgcaataagtaaagatataacgacacatcttatgggcaaatgtgcaatacaccatataa--tgacgtg 34441882  T
Q  335 acatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaatatcattttaatgatttcacaatataattttcc 425  Q
    ||||| |||| ||||| |||| |||||| |||| |||||    | |||| ||||||||  ||||||| |||| ||||| ||| ||||||||    
T  34441883 acatgaattaaatacacaaatattcaataattggtcatt----taactttaccaaaaaagtcattttcatgacttcaccatagaattttcc 34441969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 368
Target Start/End: Complemental strand, 15651032 - 15650901
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| ||| |   ||||||||||| |||||| ||||| || || ||| |||| ||||||||  ||||||||||||||| | |||||    
T  15651032 gtttaattttgatttaatcaggaac--acaattgcaataagtaaagatataatgacacaccttatgggcaaatgtgaaatacaccatataatcttacgtg 15650935  T
Q  335 acatgtattatatacataaatgttcaatgattga 368  Q
    | ||| |||| ||||| |||| || |||||||||    
T  15650934 atatggattaaatacacaaatatttaatgattga 15650901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 333
Target Start/End: Original strand, 40913164 - 40913259
Alignment:
Q  236 tttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgt 333  Q
    ||||||||||||||||| | |||   ||||||||||| | |||||||||||||| | |||||||||||||||||||||| |||  || ||||||||||    
T  40913164 tttaattttgatttaatcaaggac--acaattgcaataaataaaaatatagtggtacaccatatgagcaaatgtacaatgcacagtaaaatttgacgt 40913259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 367
Target Start/End: Original strand, 27138885 - 27139014
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| |||||   |||||||||| | ||||| ||||| || || ||  |||| |||||| | ||||||||| |||||| |||||||    
T  27138885 gtttaattttgatttaatcagggac--acaattgcaacccgtaaagatataatgacacactttatgggcaaatatgcaatacaccgtataatctgacgtg 27138982  T
Q  335 acatgtattatatacataaatgttcaatgattg 367  Q
    ||||| |||| ||||| ||||| ||||||||||    
T  27138983 acatggatta-atacacaaatgatcaatgattg 27139014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 424
Target Start/End: Complemental strand, 42005571 - 42005390
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| ||||    |||||| |||| |||||| || || || || ||| |||| |||| ||| ||||||||||||||||  ||||||    
T  42005571 gtttaattttgatttaatcaggggac-acaattacaataagtaaagatgtaatgacacaccttatgggcaa-tgtgcaatacaccatataat--gacgtg 42005476  T
Q  335 acatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaatatcattttaatgatttcacaatataattttc 424  Q
    ||||| |||| ||| | |||| ||||||| |||||||||    | ||||||||||||| |||||||| |||| ||||| ||| |||||||    
T  42005475 acatggattaaataaacaaatattcaatggttgatcatt----taacttcaccaaaaaaatcattttcatgacttcaccatagaattttc 42005390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 239 - 403
Target Start/End: Complemental strand, 6348900 - 6348736
Alignment:
Q  239 aattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacacca--tataatttgacgtgac 336  Q
    |||||||||||||||| |||    |||||||||| ||||||| |||| ||| | ||||||||| ||||||||||||| ||    || ||||||| ||| |    
T  6348900 aattttgatttaattaaggacc--caattgcaataagtaaaactataatggtacaccatatgaacaaatgtacaatatacatagtaaaatttgatgtgtc 6348803  T
Q  337 atgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaatatcattttaa 403  Q
    ||| |||| ||||| |||||    ||||||| ||||||||||||||||| ||||||  |||||||||    
T  6348802 atgcattaaatacacaaatgcattatgattggtcattctaatgacttcatcaaaaaagtcattttaa 6348736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 373
Target Start/End: Complemental strand, 19073542 - 19073406
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||| ||||||||||| |||||   |||||| |||| |||||| ||||| || || ||| |||   |||||||  ||||||||||||||| |||||||    
T  19073542 gtttaactttgatttaatcagggac--acaatttcaataagtaaatatataatgacacaccttatagacaaatgtggaatacaccatataatctgacgtg 19073445  T
Q  335 acatgtattatatacataaatgttcaatgattgatcatt 373  Q
    ||||| |||| ||||| ||||  ||||||||||| ||||    
T  19073444 acatggattaaatacacaaattctcaatgattgaccatt 19073406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 302 - 373
Target Start/End: Original strand, 18779330 - 18779401
Alignment:
Q  302 gcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaatgattgatcatt 373  Q
    |||||||| ||||| |||||||||| ||| |||||||| |||| ||||| ||||| ||||||||||| ||||    
T  18779330 gcaaatgtgcaataaaccatataatctgatgtgacatgaattaaatacacaaatgctcaatgattgaccatt 18779401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 373
Target Start/End: Original strand, 18059300 - 18059362
Alignment:
Q  311 caatacaccatataatttgacgtgacatgtattatatacataaatgttcaatgattgatcatt 373  Q
    |||||||||||||||| |||| ||||||| |||| ||||| |||| |||||| ||||| ||||    
T  18059300 caatacaccatataatctgacatgacatgaattaaatacacaaatattcaataattgaccatt 18059362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 372
Target Start/End: Complemental strand, 30845031 - 30844897
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    ||||||||||||||||||||| ||    ||| |||||| |||||| || || || || | | ||||  ||||||| ||||| | |||||||| |||||||    
T  30845031 gtttaattttgatttaattagagact--caaatgcaataagtaaagatttaatgacacatcttatggacaaatgtgcaatatatcatataatctgacgtg 30844934  T
Q  335 acatgtattatatacataaatgttcaatgattgatcat 372  Q
    ||||| |||| |||||  |||| |||||||||||||||    
T  30844933 acatggattaaataca-gaatgctcaatgattgatcat 30844897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 235 - 373
Target Start/End: Original strand, 22955176 - 22955312
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    ||||||| |||||||||| |||||   ||||||||||| |||||| ||| | || |||||| ||||||||||||| ||||||||||||||||||||||||    
T  22955176 gtttaatgttgatttaataagggac--acaattgcaataagtaaagatacaatgacataccttatgagcaaatgtgcaatacaccatataatttgacgtg 22955273  T
Q  335 acatgtattatatacataaatgttcaatgattgatcatt 373  Q
    ||||| |||| ||||| ||||||||||| ||||| ||||    
T  22955274 acatggattaaatacacaaatgttcaataattgaccatt 22955312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 235 - 373
Target Start/End: Original strand, 37854160 - 37854294
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| |||||   |||||||||||||||||| |||||    |||||| ||||||||||||| |||||||||||||||| |||||||    
T  37854160 gtttaattttgatttaatcagggac--acaattgcaatcagtaaagatataaa--cataccttatgagcaaatgtgcaatacaccatataatgtgacgtg 37854255  T
Q  335 acatgtattatatacataaatgttcaatgattgatcatt 373  Q
    ||||| |||| ||||| ||||| ||||| ||||| ||||    
T  37854256 acatggattaaatacacaaatgctcaataattgaccatt 37854294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 235 - 426
Target Start/End: Original strand, 8133423 - 8133610
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||||||||| |  |||||||||| |||||  ||||| || || ||| ||| |||||| || |||||||||||||||| |||||||    
T  8133423 gtttaattttgatttaattagggacg--caattgcaataagtaatgatataatgacagaccttataagcaaacgtgcaatacaccatataatctgacgtg 8133520  T
Q  335 acatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaatatcattttaatgatttcacaatataattttcca 426  Q
     | || |||| ||||| ||||| | |||||||||||||| |  | |||||||||||||  | ||| | |||| |||||| || |||||||||    
T  8133521 tcttgaattaaatacacaaatgcttaatgattgatcatttt--taacttcaccaaaaaagttattcttatgacttcacagtagaattttcca 8133610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 261 - 392
Target Start/End: Complemental strand, 47190219 - 47190088
Alignment:
Q  261 tacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttca 360  Q
    |||||||||||| |||||||||||||||| | ||||||||| ||||||||||||||||  |||||||||| |||||||  |||| | ||| || ||        
T  47190219 tacaattgcaataagtaaaaatatagtggtacaccatatgaacaaatgtacaatacacactataatttgatgtgacattcattaaacacacaactgcatt 47190120  T
Q  361 atgattgatcattctaatgacttcaccaaaaa 392  Q
    ||||||| |||||||||| |||| ||||||||    
T  47190119 atgattggtcattctaataactttaccaaaaa 47190088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 235 - 366
Target Start/End: Original strand, 4618619 - 4618748
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| ||| ||  ||||||||||| | |||| ||||| || || |   ||||| ||||||| |||||||||||||||||||| | |    
T  4618619 gtttaattttgatttaatgaggtat--acaattgcaataaataaatatataatgacacattttatgaacaaatgtgcaatacaccatataatttgaagcg 4618716  T
Q  335 acatgtattatatacataaatgttcaatgatt 366  Q
    ||||| |||| ||||| |||||||||||||||    
T  4618717 acatgaattaaatacacaaatgttcaatgatt 4618748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 297 - 425
Target Start/End: Complemental strand, 4902464 - 4902340
Alignment:
Q  297 tatgagcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaatatc 396  Q
    |||| |||||||| | |||||||||||||| |||||||||||| |||| ||||||||||| ||||| ||||||||||    | | ||||||||||| ||     
T  4902464 tatgggcaaatgtgctatacaccatataatctgacgtgacatggattaaatacataaatgctcaataattgatcatt----taaattcaccaaaaaaatt 4902369  T
Q  397 attttaatgatttcacaatataattttcc 425  Q
    ||||| |||| ||||| ||| ||||||||    
T  4902368 attttcatgacttcaccataaaattttcc 4902340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 235 - 373
Target Start/End: Complemental strand, 7743103 - 7742967
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||| ||||||| ||||  | ||||||||||| |||||| ||||| || ||  || ||||  |||||||||||||||||||||||| | |||||    
T  7743103 gtttaattttaatttaatcaggg--gcacaattgcaataagtaaagatataatgacacgccttatggacaaatgtacaatacaccatataatctaacgtg 7743006  T
Q  335 acatgtattatatacataaatgttcaatgattgatcatt 373  Q
    ||||  |||| ||||| ||||  ||||||||||||||||    
T  7743005 acatagattaaatacacaaatactcaatgattgatcatt 7742967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 373
Target Start/End: Original strand, 23402240 - 23402371
Alignment:
Q  240 attttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtgacatg 339  Q
    ||||||||||||| |||||   ||||||| ||| |||||| ||||| || |||| | ||||  ||||||  |||||||||||||||| ||||||||||||    
T  23402240 attttgatttaatcagggac--acaattgaaataagtaaatatataatgacatatcttatggacaaatgcgcaatacaccatataatatgacgtgacatg 23402337  T
Q  340 tattatatacataaatgttcaatgattgatcatt 373  Q
     |||| ||||| | ||||||||||||||| ||||    
T  23402338 aattaaatacacagatgttcaatgattgaccatt 23402371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 373
Target Start/End: Complemental strand, 5781700 - 5781566
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| | |||   ||||||||||| | |||| ||||| || || |   ||||  ||||| | ||||||||||||||||  ||||||    
T  5781700 gtttaattttgatttaatcaaggac--acaattgcaataaataaagatataatgacacattttatggtcaaatatgcaatacaccatataat--gacgtg 5781605  T
Q  335 acatgtattatatacataaatgttcaatgattgatcatt 373  Q
    ||||| |||| ||||| |||| || ||||||||||||||    
T  5781604 acatggattaaatacacaaatatttaatgattgatcatt 5781566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 319
Target Start/End: Complemental strand, 8758449 - 8758392
Alignment:
Q  262 acaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacacc 319  Q
    ||||||||||| |||||||||||||| ||| ||| |||||  |||||| |||||||||    
T  8758449 acaattgcaataagtaaaaatatagtagcacaccgtatgaataaatgtgcaatacacc 8758392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 235 - 425
Target Start/End: Original strand, 1879090 - 1879278
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| | |||   ||| ||||||| |||||||||||||||| | || |||||| ||||||||||||||||  |||||||||| |||    
T  1879090 gtttaattttgatttaatcaaggac--acatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 1879187  T
Q  335 acatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaatatcattttaatgatttcacaatataattttcc 425  Q
    ||||  |||| ||||| |||||    ||||||| ||||||||||||||||||||||||  ||||| |||  | ||||| ||| ||||||||    
T  1879188 acattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 1879278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 425
Target Start/End: Original strand, 1835249 - 1835437
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| | |||   ||| |||| || |||||||||||||||| | || |||||| ||||||||||||||||  |||||||||| |||    
T  1835249 gtttaattttgatttaatcaaggac--acatttgcgataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 1835346  T
Q  335 acatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaatatcattttaatgatttcacaatataattttcc 425  Q
    ||||  |||| ||||| |||||    ||||||| ||||||||||||||||||||||||  ||||| |||  | ||||| ||| ||||||||    
T  1835347 acattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 1835437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 235 - 425
Target Start/End: Original strand, 4108778 - 4108960
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| |||||   ||||||||||| |||||| |||||  | || ||| |||| |||||||| |||||||||||||||  |||||||    
T  4108778 gtttaattttgatttaatcagggac--acaattgcaataagtaaagatataacgacacaccttatgggcaaatgtgcaatacaccatataa--tgacgtg 4108873  T
Q  335 acatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaatatcattttaatgatttcacaatataattttcc 425  Q
     |||  |||| ||||| |||| ||||||||||| |||||    | |||| ||||||||  ||||||| |||| ||||| ||| ||||||||    
T  4108874 gcattaattaaatacacaaatattcaatgattggtcatt----taactttaccaaaaaagtcattttcatgacttcaccataaaattttcc 4108960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 262 - 423
Target Start/End: Original strand, 35735869 - 35736030
Alignment:
Q  262 acaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaa 361  Q
    ||||||| |||  ||||| ||||||||||| ||| ||||||||||||| |||||||||||||||||| ||| ||||   |||| ||||| ||||| ||||    
T  35735869 acaattgtaataggtaaagatatagtggcacaccttatgagcaaatgtgcaatacaccatataatttaacgggacacacattaaatacacaaatgctcaa 35735968  T
Q  362 tgattgatcattctaatgacttcaccaaaaatatcattttaatgatttcacaatataatttt 423  Q
    |||||  || |   | | |||||||||||||  ||||| |||||| ||||| ||| ||||||    
T  35735969 tgattcgtcgtatgattaacttcaccaaaaaagtcattctaatgacttcaccatagaatttt 35736030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 365
Target Start/End: Complemental strand, 3038592 - 3038462
Alignment:
Q  233 aagtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacg 332  Q
    |||||||||||||||||||| |||||   ||||||||||| |||||| ||||| || || ||| ||||  || |||| ||||||||  |||||| |||||    
T  3038592 aagtttaattttgatttaatcagggac--acaattgcaataagtaaagatataatgacacaccttatggacagatgtgcaatacactgtataatctgacg 3038495  T
Q  333 tgacatgtattatatacataaatgttcaatgat 365  Q
    ||||||  |||| ||| | ||||| ||||||||    
T  3038494 tgacataaattaaatagacaaatgctcaatgat 3038462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 412
Target Start/End: Original strand, 23176703 - 23176798
Alignment:
Q  311 caatacaccatataatttgacgtgacatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaatatcattttaatgatttc 410  Q
    ||||||||||||||||  ||||||||||| ||||  |||| |||| ||||||||||| |||||    | |||||||||||||  ||||||| |||| |||    
T  23176703 caatacaccatataat--gacgtgacatgcattaagtacacaaatattcaatgattggtcatt----taacttcaccaaaaaagtcattttcatgacttc 23176796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 208 - 422
Target Start/End: Original strand, 5915633 - 5915844
Alignment:
Q  208 ttggcaaaaaataataataataatgaagtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaat 307  Q
    |||| ||||||||||||||| ||  | |||||||||||||||||| | |||   ||||||||||  |||||||||||||||| | ||||||| |||||||    
T  5915633 ttggtaaaaaataataataaaaaa-atgtttaattttgatttaatcaaggac--acaattgcaacaagtaaaaatatagtggtacaccatataagcaaat 5915729  T
Q  308 gtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaatatcattttaatgat 407  Q
    ||||||| | |  || ||||||| ||| |||| |||| ||||| | || |   |||||||||||||||||||||||||||| ||| |||||||||| ||     
T  5915730 gtacaatgcgcactaaaatttgatgtggcatgcattaaatacacagatatattatgattgatcattctaatgacttcaccagaaaaatcattttaacgac 5915829  T
Q  408 ttcacaatataattt 422  Q
    ||||| ||| |||||    
T  5915830 ttcaccatagaattt 5915844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 262 - 426
Target Start/End: Complemental strand, 37793543 - 37793379
Alignment:
Q  262 acaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaa 361  Q
    ||||||||||| |||||||||||||||| | ||||||||| ||||||||||||||||  |||||||||| | |||||  |||| | ||| || ||    |    
T  37793543 acaattgcaataagtaaaaatatagtggtacaccatatgaacaaatgtacaatacacactataatttgatgagacattcattaaacacacaactgcatta 37793444  T
Q  362 tgattgatcattctaatgacttcaccaaaaatatcattttaatgatttcacaatataattttcca 426  Q
    |||||||||||||||||||||||||||||||  ||||| |||  | |||||| || |||||||||    
T  37793443 tgattgatcattctaatgacttcaccaaaaaagtcattctaacaacttcacagtagaattttcca 37793379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 262 - 392
Target Start/End: Complemental strand, 5812726 - 5812596
Alignment:
Q  262 acaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaa 361  Q
    ||||||||||| |||||||||| ||| | | | |||||||||||||||||||||| | ||||||||||| || ||||| |||| ||||| |||||    |    
T  5812726 acaattgcaataagtaaaaataaagttgtacatcatatgagcaaatgtacaatacgcaatataatttgatgttacatgcattaaatacacaaatgcatta 5812627  T
Q  362 tgattgatcattctaatgacttcaccaaaaa 392  Q
    |||||||||||||||||||||||| ||||||    
T  5812626 tgattgatcattctaatgacttcagcaaaaa 5812596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 215 - 355
Target Start/End: Complemental strand, 22729914 - 22729777
Alignment:
Q  215 aaaataataataataatgaagtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaat 314  Q
    ||||||||||||||||  | |||||||||||||| ||| |||     ||| ||||||| ||| || ||||||||||| ||||||||||||||||| ||||    
T  22729914 aaaataataataataaaaatgtttaattttgattcaatcaggac---acagttgcaataagttaagatatagtggcacaccatatgagcaaatgtgcaat 22729818  T
Q  315 acaccatataatttgacgtgacatgtattatatacataaat 355  Q
    ||||| |||||||||| ||| |||| |||| ||||| ||||    
T  22729817 acaccgtataatttgatgtggcatgcattaaatacacaaat 22729777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 235 - 355
Target Start/End: Complemental strand, 1012481 - 1012362
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| |||||   | ||||||||| |||||| ||||| || || ||| |||| |||||||| |||||||||||||||| |||||||    
T  1012481 gtttaattttgatttaatcagggacaca-aattgcaataagtaaagatataatgacacaccttatgggcaaatgtgcaatacaccatataatctgacgtg 1012383  T
Q  335 acatgtattatatacataaat 355  Q
    ||||| |||| ||||| ||||    
T  1012382 acatggattaaatacacaaat 1012362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 372
Target Start/End: Original strand, 33036048 - 33036200
Alignment:
Q  217 aataataataataatgaagtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatac 316  Q
    ||||||||||||||| | |||||||||||||||||| || ||    |||||||||| |||||| ||||| || || ||| |||  |||||||| ||||||    
T  33036048 aataataataataataatgtttaattttgatttaatcagagact--caattgcaataagtaaagatataatgacaaaccttataggcaaatgtgcaatac 33036145  T
Q  317 accatataatttgacgtgacatgtattatatacataaatgttcaatgattgatcat 372  Q
    || ||||||| | |||| ||||| |||| ||||| || || |||||||||||||||    
T  33036146 acaatataatctaacgtaacatggattaaatacagaa-tgctcaatgattgatcat 33036200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 425
Target Start/End: Complemental strand, 2704629 - 2704512
Alignment:
Q  302 gcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaatatcatttt 401  Q
    |||||||| ||||||||||||||||  |||||||| || |||| ||||| |||| |||||||||||||||||    | ||||||||| |||  |||||||    
T  2704629 gcaaatgtgcaatacaccatataat--gacgtgacgtgaattaaatacacaaatattcaatgattgatcatt----taacttcaccagaaaagtcatttt 2704536  T
Q  402 aatgatttcacaatataattttcc 425  Q
     |||| ||||| ||| ||||||||    
T  2704535 catgacttcaccataaaattttcc 2704512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 366
Target Start/End: Original strand, 22756821 - 22756924
Alignment:
Q  263 caattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaat 362  Q
    |||||| ||| |||||| |||||||||||  |  ||||||||||||| ||||||||| |||||||||| ||| |||| |||| ||||| ||||  |||||    
T  22756821 caattggaataagtaaagatatagtggcacgctgtatgagcaaatgtgcaatacaccgtataatttgatgtggcatgcattaaatacacaaatactcaat 22756920  T
Q  363 gatt 366  Q
    ||||    
T  22756921 gatt 22756924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 373
Target Start/End: Complemental strand, 9743705 - 9743636
Alignment:
Q  304 aaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaatgattgatcatt 373  Q
    |||||| |||||||||||||||| |||||| ||||| |||| ||||| ||||||||||| |||| |||||    
T  9743705 aaatgtgcaatacaccatataatatgacgttacatggattaaatacacaaatgttcaataattggtcatt 9743636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 235 - 339
Target Start/End: Complemental strand, 2570662 - 2570560
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    ||||| ||||||||||||||||||   ||||||||||| | |||| ||||| || || ||  |||   ||||| |||||||||||||||||| |||||||    
T  2570662 gtttacttttgatttaattagggac--acaattgcaataaataaagatataatgacacactttatagccaaatatacaatacaccatataatctgacgtg 2570565  T
Q  335 acatg 339  Q
    |||||    
T  2570564 acatg 2570560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 380 - 429
Target Start/End: Complemental strand, 53124332 - 53124283
Alignment:
Q  380 acttcaccaaaaatatcattttaatgatttcacaatataattttccaatt 429  Q
    ||||||||||||| ||||||||||||| ||||  ||||||||||||||||    
T  53124332 acttcaccaaaaaaatcattttaatgacttcatcatataattttccaatt 53124283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 367
Target Start/End: Original strand, 54995664 - 54995793
Alignment:
Q  236 tttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtga 335  Q
    ||||||||||||||||| |||||   ||||||||||| |||||| |||||  | || ||  ||||  ||||||| ||||||| |||||||  |||| |||    
T  54995664 tttaattttgatttaatcaggga--cacaattgcaataagtaaagatataaagacacacattatggacaaatgtgcaatacatcatataacctgacatga 54995761  T
Q  336 catgtattatatacataaatgttcaatgattg 367  Q
    |||| |||| ||||  |||||| |||||||||    
T  54995762 catggattaaatacgcaaatgtacaatgattg 54995793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 372
Target Start/End: Complemental strand, 51204703 - 51204632
Alignment:
Q  301 agcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaatgattgatcat 372  Q
    ||||||||| |||| ||||||||||| ||| |||||||| |||| ||||| ||| | ||||| |||||||||    
T  51204703 agcaaatgtgcaatgcaccatataatctgatgtgacatggattaaatacacaaaagctcaataattgatcat 51204632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 425
Target Start/End: Complemental strand, 3042656 - 3042611
Alignment:
Q  380 acttcaccaaaaatatcattttaatgatttcacaatataattttcc 425  Q
    ||||||||||||| |||||||| |||||||||| ||| ||||||||    
T  3042656 acttcaccaaaaaaatcatttttatgatttcaccatagaattttcc 3042611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 235 - 392
Target Start/End: Original strand, 21263909 - 21264064
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| | |||   ||||||||||| |||||||||||||||| | ||||||||| ||||||||||||||||  |||||||||| |||    
T  21263909 gtttaattttgatttaatcaaggac--acaattgcaataagtaaaaatatagtggtacaccatatgaacaaatgtacaatacacattataatttgatgtg 21264006  T
Q  335 acatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaa 392  Q
    ||||  |||| | ||| || ||    ||||||| ||||||||||||||||||||||||    
T  21264007 acattcattaaacacacaactgcattatgattggtcattctaatgacttcaccaaaaa 21264064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 220 - 392
Target Start/End: Complemental strand, 421592 - 421422
Alignment:
Q  220 aataataataatgaagtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacacc 319  Q
    |||||||||||  | |||||||||||||||||| | |||   ||||||||||| |||||| ||||| ||| | | | ||| || |||||| ||||| ||     
T  421592 aataataataaaaatgtttaattttgatttaatcaaggac--acaattgcaattagtaaagatataatggaacatcgtataagtaaatgtgcaataaact 421495  T
Q  320 atataatttgacgtgacatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaa 392  Q
     ||||||||||| ||||||  |||| ||||| |||||||||||||||||||||||| ||||||||| ||||||    
T  421494 gtataatttgacatgacatacattaaatacacaaatgttcaatgattgatcattctcatgacttcagcaaaaa 421422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 235 - 373
Target Start/End: Original strand, 10758164 - 10758300
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    ||||||||||||||||||||||||   ||||||||||| |||||||||||| || || ||  |||  |||||||| |||||||||||||||| ||| |||    
T  10758164 gtttaattttgatttaattagggac--acaattgcaataagtaaaaatataatgacacacactataggcaaatgttcaatacaccatataatctgatgtg 10758261  T
Q  335 acatgtattatatacataaatgttcaatgattgatcatt 373  Q
     |||| |||| ||||| ||||| ||||||||||| ||||    
T  10758262 gcatgaattaaatacacaaatgctcaatgattgaccatt 10758300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 235 - 366
Target Start/End: Complemental strand, 27118514 - 27118385
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| |||||   ||||||||||| |||||| ||||| || || ||| ||||| ||||||| ||||||| |||||||| |||||||    
T  27118514 gtttaattttgatttaatcagggac--acaattgcaataagtaaagatataatgacacaccttatgaacaaatgtgcaatacatcatataatatgacgtg 27118417  T
Q  335 acatgtattatatacataaatgttcaatgatt 366  Q
     |||| |||| ||||||||||| || ||||||    
T  27118416 gcatggattaaatacataaatgctccatgatt 27118385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 262 - 373
Target Start/End: Complemental strand, 16127679 - 16127568
Alignment:
Q  262 acaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaa 361  Q
    ||||||||||| |||||| ||||| || || ||| |||||| |||||| ||||||| |||||||| ||||||| |||| |||| ||||| ||||| ||||    
T  16127679 acaattgcaataagtaaacatataatgacacaccttatgagtaaatgtgcaatacatcatataatctgacgtgtcatggattaaatacacaaatgatcaa 16127580  T
Q  362 tgattgatcatt 373  Q
    ||||||| ||||    
T  16127579 tgattgaccatt 16127568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 235 - 373
Target Start/End: Original strand, 13876783 - 13876919
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| | ||||  ||||||||||| | |||||||||| || || ||  |||| ||||||||  |||||||||||| || |||||||    
T  13876783 gtttaattttgatttaatcaaggat--acaattgcaataactaaaaatataatgacacactttatgggcaaatgtgtaatacaccatatgatatgacgtg 13876880  T
Q  335 acatgtattatatacataaatgttcaatgattgatcatt 373  Q
     |||  |||| ||||| ||||  ||||||||||||||||    
T  13876881 gcattgattaaatacacaaatactcaatgattgatcatt 13876919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 367
Target Start/End: Complemental strand, 15964284 - 15964154
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| |||||   |||||||  ||||||||  ||||| || || | | ||||  ||||||| |||||||| |||||||||||||||    
T  15964284 gtttaattttgatttaatcagggac--acaattgatatcagtaagtatataatgacacatcttatggacaaatgtgcaatacactatataatttgacgtg 15964187  T
Q  335 acatgtattatatacataaatgttcaatgattg 367  Q
    ||||  |||| ||||| ||||| | ||||||||    
T  15964186 acatagattaaatacacaaatgcttaatgattg 15964154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 364
Target Start/End: Complemental strand, 28012213 - 28012123
Alignment:
Q  274 agtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaatga 364  Q
    |||||| ||||||| ||| | | || |||||||||| |||||||||||||||||| | |||||||| |||| ||||| ||||  |||||||    
T  28012213 agtaaagatatagtagcacatcttaggagcaaatgtgcaatacaccatataatttaatgtgacatgcattaaatacacaaatactcaatga 28012123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 362
Target Start/End: Complemental strand, 16132659 - 16132534
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| || ||   ||||||||||| |||||| ||||| || || ||  |||| |||||||| ||||||||| |||||| | ||||     
T  16132659 gtttaattttgatttaatcagagac--acaattgcaataagtaaagatataatgacacacattatgtgcaaatgtgcaatacaccgtataatctcacgtt 16132562  T
Q  335 acatgtattatatacataaatgttcaat 362  Q
     |||| |||| ||||| ||||| |||||    
T  16132561 gcatggattaaatacacaaatgctcaat 16132534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 368
Target Start/End: Original strand, 17695937 - 17696008
Alignment:
Q  297 tatgagcaaatgtacaatacaccatataatttgacgtgacatgtattatatacataaatgttcaatgattga 368  Q
    ||||| ||||| |||||| |||||||| || |||||||  ||| |||| |||||||||| ||||||||||||    
T  17695937 tatgaacaaatatacaatgcaccatatgatctgacgtggtatgaattaaatacataaatattcaatgattga 17696008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 220 - 392
Target Start/End: Original strand, 8980 - 9150
Alignment:
Q  220 aataataataatgaagtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacacc 319  Q
    |||||||||||  | |||||||||||||||||| | |||   ||||||||||| |||||| ||||| ||| | | | ||| || |||||| ||||| ||     
T  8980 aataataataaaaatgtttaattttgatttaatcaaggac--acaattgcaattagtaaagatataatggaacatcgtataagtaaatgtgcaataaact 9077  T
Q  320 atataatttgacgtgacatgtattatatacataaatgttcaatgattgatcattctaatgacttcaccaaaaa 392  Q
     ||||||||||| ||||||  |||| ||||| |||||||||||||||||||||||| ||||||||| ||||||    
T  9078 gtataatttgacatgacatacattaaatacacaaatgttcaatgattgatcattctcatgacttcagcaaaaa 9150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 240 - 373
Target Start/End: Original strand, 24686 - 24817
Alignment:
Q  240 attttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtgacatg 339  Q
    ||||||||||||| |||||   ||||||| ||| |||||| ||||| |  |||||| |||| |||||||  |||||||||||||||| ||||||||||||    
T  24686 attttgatttaatcagggac--acaattggaataagtaaatatataataacataccttatgggcaaatgcgcaatacaccatataatctgacgtgacatg 24783  T
Q  340 tattatatacataaatgttcaatgattgatcatt 373  Q
     |||| ||||| ||||| ||||||||||| ||||    
T  24784 aattaaatacacaaatgctcaatgattgaccatt 24817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 235 - 366
Target Start/End: Complemental strand, 5774 - 5645
Alignment:
Q  235 gtttaattttgatttaattagggatgtacaattgcaatcagtaaaaatatagtggcataccatatgagcaaatgtacaatacaccatataatttgacgtg 334  Q
    |||||||||||||||||| |||||  ||  |||||||| || ||| ||||| || || ||| |||  |||||||| |||||||||||||||| | || ||    
T  5774 gtttaattttgatttaatgagggacata--attgcaataaggaaatatataatgacacaccttataggcaaatgtgcaatacaccatataatctaacatg 5677  T
Q  335 acatgtattatatacataaatgttcaatgatt 366  Q
    ||||| |||| ||||| ||||| |||||||||    
T  5676 acatgaattaaatacacaaatgctcaatgatt 5645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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