View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8286_low_5 (Length: 551)
Name: NF8286_low_5
Description: NF8286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8286_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 13 - 532
Target Start/End: Complemental strand, 32727376 - 32726855
Alignment:
| Q |
13 |
acatcaaaccaaactatgagctgggtgagatagatggaaacttgaggctcgtaaaaagttatgcataaactcaaggggcttatgagcaattgnnnnnnnn |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32727376 |
acatcaaaccaaactatgagctgggtgagatagatggaaacttgaggctcgtaaaaagttatgtataaactcaaggggcttatgagcaattgaaaaaaaa |
32727277 |
T |
|
| Q |
113 |
ttacataggtatagtgactatgctaatctataaaattnnnnnnnnnnt--tcaagagcaagacaaagttggagtataaataaaaaacggcagtcataatt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32727276 |
ttacataggtatagtgactatgctaatctataaaattaaaaaaaaaaaaatcaagagcaagacaaagttggagtataaataaaaaacggcagtcataatt |
32727177 |
T |
|
| Q |
211 |
atttacgaatatactcttttataagttatttatttcataaaatatttaaaaataatttgcattcacatcaggtaggaggtcatgttgttagtgacaacag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32727176 |
atttacgaatatactcttttataagttatttatttcataaaatatttaaaaataatttgcattcacatcaggtaggaggtcatgttgttagtgacaacag |
32727077 |
T |
|
| Q |
311 |
cgcacataacaatattctcttaacttaccaatcagtttttggacttccactgtctcatcctctgaatccttcttctctctctccatcacctctcaacccc |
410 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32727076 |
cgcacataacaatattcccttaacttaccaatcagtttttggacttccactgtctcatcctctgaatccttcttctctctctccatcacctctcaacccc |
32726977 |
T |
|
| Q |
411 |
tttataaacctcttcccataccattcattctccctcaccacacaacaaaacactactcaataataatatacacaaacctaactatatattatatttttct |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32726976 |
tttataaacctcttcccataccattcattctccctcaccacacaacaaaccacaactcaataataatatacacaaacctaactatatattatattttgct |
32726877 |
T |
|
| Q |
511 |
gatctctttctcttaaacacct |
532 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
32726876 |
gatctctttctcttaaacacct |
32726855 |
T |
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