View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8286_low_8 (Length: 350)
Name: NF8286_low_8
Description: NF8286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8286_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 2786254 - 2785917
Alignment:
| Q |
1 |
cagaaggtttcagggaagcccgcgctgccttgagtccttccggaacaacaaacttgccttcaaatcaaattcatgttaaagttgatgatgtatctgtcgc |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2786254 |
cagaaggtttcagggaagcccgcactgccttgagtccttccggaacaacaaacttgccttcaaatcaaattcatgttaaagttgacgatgtatctgtcgc |
2786155 |
T |
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| Q |
101 |
accagttacgggggcacccccatcttcattgccatcggtgaatggatctattgctaaccggcagccaatacctaatgtgaatgtgactcctgctactgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
2786154 |
accagttacgggggcacccccatcttcattgccatcggtgaatggatctattgctaaccggcagccaatacctaatgtcagtgtgactcctgctactgta |
2786055 |
T |
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| Q |
201 |
aaagttgagccagtgcctgtaaaagttgagccattgccggtaaaagttgagcgtggcgtaaaaattgagcgtggcacggcattttctggaccatcagtaa |
300 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| |||||| |
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| T |
2786054 |
aaagctgagccagtgcctgtaaaagttgagccattgccggtaaaagttgagcgtgtcgtaaaaattgagcgtggcacgacatcttctggaccgccagtaa |
2785955 |
T |
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| Q |
301 |
ttactagttcgggatatcttactgcttctacacaggtt |
338 |
Q |
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| T |
2785954 |
ttactagttcgggatatcttactgcttctacacaggtt |
2785917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 22518246 - 22518378
Alignment:
| Q |
1 |
cagaaggtttcagggaagcccgcgctgccttgagtccttccggaacaacaaacttgccttcaaatcaaattcatgttaaagttgatgatgtatctgtcgc |
100 |
Q |
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|||||||||| |||||||||||| ||||||||||| | ||||| | || ||||||||||||||| || ||| ||||| || | |||||||| | | |
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| T |
22518246 |
cagaaggttttagggaagcccgcagtgccttgagtcgacctggaacta---acatgccttcaaatcaaagtcctgtaaaagtagacgctgtatctgccac |
22518342 |
T |
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| Q |
101 |
accagttacgggggcacccccatcttcattgccatc |
136 |
Q |
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| T |
22518343 |
accagttacgggggcacccccatcttcattgccatc |
22518378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 22519728 - 22519795
Alignment:
| Q |
138 |
gtgaatggatctattgctaaccggcagccaatacctaatgtgaatgtgactcctgctactgtaaaagt |
205 |
Q |
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||||||||||||||| | |||||||| ||||||||| || ||||||||||||||||||||||||||| |
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| T |
22519728 |
gtgaatggatctattccgaaccggcaaccaatacctgctgggaatgtgactcctgctactgtaaaagt |
22519795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 22520289 - 22520342
Alignment:
| Q |
285 |
tctggaccatcagtaattactagttcgggatatcttactgcttctacacaggtt |
338 |
Q |
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|||||||| |||||||| |||||||| |||| ||||||||||||| |||||||| |
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| T |
22520289 |
tctggaccgtcagtaataactagttctggatctcttactgcttctgcacaggtt |
22520342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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