View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8287_low_1 (Length: 526)

Name: NF8287_low_1
Description: NF8287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8287_low_1
NF8287_low_1
[»] chr4 (3 HSPs)
chr4 (168-436)||(22466951-22467220)
chr4 (87-169)||(31525493-31525577)
chr4 (244-431)||(4537795-4537985)
[»] chr2 (1 HSPs)
chr2 (7-169)||(10983066-10983228)
[»] chr6 (1 HSPs)
chr6 (306-436)||(27908549-27908678)
[»] chr1 (4 HSPs)
chr1 (87-171)||(49195449-49195535)
chr1 (131-170)||(40908315-40908354)
chr1 (131-169)||(46566569-46566607)
chr1 (103-170)||(12606644-12606712)
[»] chr3 (1 HSPs)
chr3 (103-170)||(33365924-33365992)
[»] chr5 (4 HSPs)
chr5 (236-434)||(29997562-29997762)
chr5 (286-355)||(4368904-4368973)
chr5 (103-169)||(12870155-12870222)
chr5 (131-169)||(43469642-43469680)
[»] chr7 (1 HSPs)
chr7 (131-169)||(10646145-10646183)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 168 - 436
Target Start/End: Complemental strand, 22467220 - 22466951
Alignment:
Q  168 ataatacaaaagaactagaagttattttcctatgcaatgaagaagtttgtcaccatagtcttttgttccttgcgccacaagcaattgaagctgaagaaag 267  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22467220 ataatacaaaagaactagaagttagtttactatgcaatgaagaagttcatcaccatagtcttttgttccttgcgccacaagcaattgaagttgaagaaag 22467121  T
Q  268 tgt-agaattagaatttagttgtaactattttgcttaagtttagggaagttagttatgattgaatgatataaggatcacaatagtttataatcatccttc 366  Q
    ||| ||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22467120 tgttagaattagaatttagttgtaactattttgcttaagtttaagtgagttagttatgattgaatgatgtaaggatcacaatagtttataatcatccttc 22467021  T
Q  367 actgaattgctataaatatatgtaattgcttttattgcaagttaaaatgaaataatggttcattgaacta 436  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22467020 actgaattgctataaatacatgtaattgcttttattgcaagttaaaatgaaataatggttcattgaacta 22466951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 169
Target Start/End: Original strand, 31525493 - 31525577
Alignment:
Q  87 attaatgacagattaag-agggaaaaacaggattgtttaggggaa-actgccagctcatcatgtctggcttttataataaaggat 169  Q
    |||||| |||||||| | |||||||||||||| || |||||| || ||||||||||||||| |||||||||||||||||||||||    
T  31525493 attaattacagattagggagggaaaaacaggagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggat 31525577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 431
Target Start/End: Complemental strand, 4537985 - 4537795
Alignment:
Q  244 acaagcaattgaagctgaaga-aagtgtagaattagaattta-gttgtaactattttgcttaagtttagggaagttagttatgattgaatgatataagga 341  Q
    |||||||||||||||| |||| || | |||| |||||| ||  ||||| |||| ||| |||||||||||| ||||||||||||||||| |||    | ||    
T  4537985 acaagcaattgaagcttaagacaattttagacttagaaattctgttgtgactacttttcttaagtttaggaaagttagttatgattgagtgaggcgaaga 4537886  T
Q  342 tcacaatagtttataatcatccttcactgaattgctataaatatatgtaattgcttttattgcaagttaaaatg-aaataatggttcattg 431  Q
    ||||  ||||||||    |||  |||||||| | | |||||||  ||||||| ||| ||||||||||||  ||| ||||||||||||||||    
T  4537885 tcacggtagtttatgccgatctatcactgaaatacaataaatacttgtaattacttctattgcaagttacgatgaaaataatggttcattg 4537795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 7 - 169
Target Start/End: Original strand, 10983066 - 10983228
Alignment:
Q  7 tgattggttgtttgatgtacatgaaaggtcacatttaatgaggctaatatgtagtgggtggttagcagataagccttgcaattaatgacagattaagagg 106  Q
    ||||||||||  ||||||||||||||||||||| | |||| | | || | | ||||||||||| |||||||||||||||||||||||||  |||| ||||    
T  10983066 tgattggttgaatgatgtacatgaaaggtcacaataaatgcgcccaagaggaagtgggtggttggcagataagccttgcaattaatgacgaattaggagg 10983165  T
Q  107 gaaaaacaggattgtttaggggaaactgccagctcatcatgtctggcttttataataaaggat 169  Q
    ||||| |||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||    
T  10983166 gaaaatcaggattgattagggcaaactgccagctcatcaagtctggcttttataataaaggat 10983228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 306 - 436
Target Start/End: Complemental strand, 27908678 - 27908549
Alignment:
Q  306 tttagggaagttagttatgattgaatgatataaggatcacaatagtttataatcatccttcactgaattgctataaatatatgtaattgcttttattgca 405  Q
    ||||||||||||||||||||| || |||   |||||||||||||||| |||||  ||||||||||||  |||||||||| |||||||||||| |||||||    
T  27908678 tttagggaagttagttatgatagagtgaagcaaggatcacaatagtt-ataatagtccttcactgaaaagctataaatacatgtaattgcttctattgca 27908580  T
Q  406 agttaaaatgaaataatggttcattgaacta 436  Q
    | ||||  ||||| |||||||||||||||||    
T  27908579 aattaatgtgaaaaaatggttcattgaacta 27908549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 49195449 - 49195535
Alignment:
Q  87 attaatgacagattaag-agggaaaaacaggattgtttaggggaa-actgccagctcatcatgtctggcttttataataaaggataa 171  Q
    |||||| |||||||| | |||||||||||||| || |||||| || ||||||||||||||| |||||||||||||||||||||||||    
T  49195449 attaattacagattagggagggaaaaacaggagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggataa 49195535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 170
Target Start/End: Complemental strand, 40908354 - 40908315
Alignment:
Q  131 actgccagctcatcatgtctggcttttataataaaggata 170  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  40908354 actgccagctcatcaagtctggcttttatagtaaaggata 40908315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 46566607 - 46566569
Alignment:
Q  131 actgccagctcatcatgtctggcttttataataaaggat 169  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  46566607 actgccagctcatcaaatctggcttttataataaaggat 46566569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 12606644 - 12606712
Alignment:
Q  103 gagggaaaaacaggattgtttaggggaa-actgccagctcatcatgtctggcttttataataaaggata 170  Q
    |||||||||  |||| || |||||| || ||||||||| ||||| |||||||||||||| |||||||||    
T  12606644 gagggaaaataaggagtgattagggcaacactgccagcacatcaagtctggcttttatagtaaaggata 12606712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 33365992 - 33365924
Alignment:
Q  103 gagggaaaaacaggattgtttaggggaa-actgccagctcatcatgtctggcttttataataaaggata 170  Q
    ||||||||||||||| || |||||| || ||||||||||||||| ||||||||||||||||||||||||    
T  33365992 gagggaaaaacaggagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggata 33365924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 236 - 434
Target Start/End: Original strand, 29997562 - 29997762
Alignment:
Q  236 cttgcgccacaagcaattgaagctgaagaaagtgt-agaattagaattta-gttgtaactattttgcttaagtttagggaagttagttatgattgaatga 333  Q
    |||||| || |||||||||||||| |||| ||| | ||| |||||| | | ||| | |||| |||||| | ||||||| ||||||||||||||  | |||    
T  29997562 cttgcgacaaaagcaattgaagcttaagacagttttagacttagaaatcatgttatgactactttgctcatgtttaggaaagttagttatgatacagtga 29997661  T
Q  334 tataaggatcacaatagtttataatcatccttcactgaattgctataaatatatgtaattgcttttattgcaagttaaaatgaaataatggttcattgaa 433  Q
      | | ||||||| ||||||||  | |||  |||||||| | | |||| || |||||||||||| |||| ||||||||  ||||||||||||||||||||    
T  29997662 ggtgaagatcacagtagtttatgctgatctatcactgaaataccataagtacatgtaattgcttctattacaagttaatgtgaaataatggttcattgaa 29997761  T
Q  434 c 434  Q
    |    
T  29997762 c 29997762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 4368904 - 4368973
Alignment:
Q  286 ttgtaactattttgcttaagtttagggaagttagttatgattgaatgatataaggatcacaatagtttat 355  Q
    ||||||||| |||||||| ||||| ||||||||||||||||||| ||| || | ||||||||||| ||||    
T  4368904 ttgtaactactttgcttatgtttatggaagttagttatgattgagtgagatgaagatcacaatagcttat 4368973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 12870222 - 12870155
Alignment:
Q  103 gagggaaaaacaggattgtttaggggaa-actgccagctcatcatgtctggcttttataataaaggat 169  Q
    ||||||||||||| | || |||||| || ||||||||||||||| |||||||||||||| ||||||||    
T  12870222 gagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttatagtaaaggat 12870155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 43469642 - 43469680
Alignment:
Q  131 actgccagctcatcatgtctggcttttataataaaggat 169  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  43469642 actgccagctcatcaagtctggcttttataataaaggat 43469680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 10646145 - 10646183
Alignment:
Q  131 actgccagctcatcatgtctggcttttataataaaggat 169  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  10646145 actgccagctcatcaagtctggcttttagaataaaggat 10646183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University