View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8287_low_5 (Length: 219)
Name: NF8287_low_5
Description: NF8287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8287_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 28173252 - 28173470
Alignment:
| Q |
1 |
ccagttccattctgtttttgtttgaccagtctcaaaggcacaagcaactgaggagaaccctccaatgttgatgtcctgtggccatgtcctctgtaagcag |
100 |
Q |
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| T |
28173252 |
ccagttccattctgtttttgtttgtcctgtctcaaaggaacaagcaactgaggagaaccctccaatgttgatgtcctgtggccatgtcctctgtaagcag |
28173351 |
T |
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| Q |
101 |
tctatcttgaaaatgtccaagaatagcacaaaagtatttaagtgcccgtattgtccctttgatattgatgcagcacagtgcaagcaactatatttgtgat |
200 |
Q |
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| T |
28173352 |
tctatcttgaaaatgtccaagaatagcacaaaagtatttaagtgcccgtattgtccctttgatattgatgcagcacagtgcaagcaactatatttgtgat |
28173451 |
T |
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| Q |
201 |
tttcttgtatttgtatcaa |
219 |
Q |
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| T |
28173452 |
tttcttgtatttgtatcaa |
28173470 |
T |
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Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 29 - 216
Target Start/End: Original strand, 19788894 - 19789081
Alignment:
| Q |
29 |
gtctcaaaggcacaagcaactgaggagaaccctccaatgttgatgtcctgtggccatgtcctctgtaagcagtctatcttgaaaatgtccaagaatagca |
128 |
Q |
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||||| |||| ||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||| |||| |
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| T |
19788894 |
gtctcgaaggaacaagcaactgaggataaccatccaatgttgttgtcctgtggccatgtcctctgtgatcagtctatcttgaaaatgtccatgaacagca |
19788993 |
T |
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| Q |
129 |
caaaagtatttaagtgcccgtattgtccctttgatattgatgcagcacagtgcaagcaactatatttgtgattttcttgtatttgtat |
216 |
Q |
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| T |
19788994 |
cagaagcgtttaagttcccatattgtccctttgatattgatgcagcacagtgcatgcaactatgtttgtgattttcatggatttgtat |
19789081 |
T |
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