View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8288_high_1 (Length: 718)
Name: NF8288_high_1
Description: NF8288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8288_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 618; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 24 - 701
Target Start/End: Original strand, 40060676 - 40061368
Alignment:
| Q |
24 |
gctttttccaacgaggtggaacatttcaaaattattatatggtattgcaacctgaaatgttcttcacaagttcaatttactatatggtattgttcttaag |
123 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40060676 |
gctttttccaacgaggtggaacatttcaaaattactatatggtattgcaacctgaaatgttcttcacaagttcaatttactatatggtattgttcttaag |
40060775 |
T |
|
| Q |
124 |
gccagtttttaagaggaattagttgatactgtatcattttttattgcctgctcaaaaacagtaccatggaggaaccaactttgaccgaagtaccggcgga |
223 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40060776 |
gccagtttttaagaggaattagttgatactgtatcattttttattgcctgctcaaaaacagtaccatggaggaaccaactttgaccgaagtaccggcgga |
40060875 |
T |
|
| Q |
224 |
ccattcattgctacaagttacgattttgatgcaccgattgatgaatatggtatgtccttcagcctacatactaaatatatgatgttcatgttgtagccat |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40060876 |
ccattcattgctacaagttacgattttgatgcaccgattgatgaatatggtatgtccttcagcctacatactaaatatatgttgttcatgttgtagccat |
40060975 |
T |
|
| Q |
324 |
cac-aaatgtaccactggtaatacatcgaagaagataaattaataatatcacatgcatagtttatttcttatatgcacaagagaaattacactggacaat |
422 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40060976 |
cacaaaatgtaccaccggtaatacatcgaagaagataaattaataatatcacatgcatagtttatttcttatatgcacaagagaaattacactggacaat |
40061075 |
T |
|
| Q |
423 |
tgtg--------------ttttttaatatatttgctatatactgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcacaaggccgta |
508 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40061076 |
tgtgttttttaatatatattttttaatatatttgctatatactgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcacaaggccgta |
40061175 |
T |
|
| Q |
509 |
aagctttgtgaggaagcgttaatagctacagaacccaagattacttctcttggtccaaacctagaggtagaggcggtttatattgaaatttttgcccgtt |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40061176 |
aagctttgtgaggaagcgttaatagctacagaacctaagattacttctcttggtccaaacctagaggtagaggcggtttatattgaaatttttgcccgtt |
40061275 |
T |
|
| Q |
609 |
tatcttatttcgcgtctttggatagaatttattttgtaactaaaactcatccagtttgtcaatctttctctggaaaattccctgcattgagta |
701 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40061276 |
tatcttatttcgcgtcttaggatagaatttattttgtaactaaaactcatccagtttgtcaatctttctctggaaaattccctgcattgagta |
40061368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 133 - 671
Target Start/End: Original strand, 40086684 - 40087228
Alignment:
| Q |
133 |
taagaggaattagttgatactgtatcattttttattgcctgctcaaaaacagtaccatggaggaaccaactttgaccgaagtaccggcggaccattcatt |
232 |
Q |
| |
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||||||||||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
40086684 |
taagaggaattagctgatactgtatcatttttcattgcttgactaaaaacagtaccatggaggaaccaactttgaccgaagtactggaggaccattcatt |
40086783 |
T |
|
| Q |
233 |
gctacaagttacgattttgatgcaccgattgatgaatatggtatg--tccttcagcctacatact-aaatatatgatgttcatgttgtagccatcacaaa |
329 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||| | || | |||| ||| |||||||||||||||| ||||||| |
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| T |
40086784 |
gcaacaagttatgattttgatgcaccgattgatgagtatggtatgactccttcaaccttcttattgaaatctat--tgttcatgttgtagccgtcacaaa |
40086881 |
T |
|
| Q |
330 |
tgtaccactggtaatacatcgaagaagataaattaataatatcacatgcatagtttatttcttatatgcacaagagaaattacactggacaattgtgttt |
429 |
Q |
| |
|
| | ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||||||||||||||||||| |||| ||| |
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|
| T |
40086882 |
tacaacactggtaatacatcgaagaagataaattgataatatcacatggatagtttatttcttatatgtagaagagaaattacactggacgattggattt |
40086981 |
T |
|
| Q |
430 |
tttaatatatttgctatatactgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaagcgtta |
529 |
Q |
| |
|
|||||||| || |||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| ||| |
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|
| T |
40086982 |
tttaatatcttcgctacatgctgcaggagttattaggcagccgaagtggggtcatcttaaagatgtgcacaaggccataaagctttgtgaagaagcatta |
40087081 |
T |
|
| Q |
530 |
atagctacagaacccaagattacttctcttggtccaaacctagaggtagaggcggtttatattgaaatttttgcccgttt-----atcttatttcgcgtc |
624 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||| ||||| |||||||| |||||| |
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|
| T |
40087082 |
atagccgcagaacccaagattacttatcttggtccaaacctagaggtatagatggtttatattgaaatttttgttcgtttgaaacatcttattccgcgtc |
40087181 |
T |
|
| Q |
625 |
tttggatagaatttattttgtaactaaaactcatccagtttgtcaat |
671 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||| |||||||||| |
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|
| T |
40087182 |
ttaggatataatttattttgtaactaaaactcatctggtttgtcaat |
40087228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 24 - 602
Target Start/End: Original strand, 40078798 - 40079393
Alignment:
| Q |
24 |
gctttttccaacgaggtggaacatttcaaaattattatatggtattgcaacctgaaatgttcttcacaagttcaatttactatatggtattgtt-cttaa |
122 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||| |||||||||||| |||||| || | || ||| | |
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|
| T |
40078798 |
gctttttccaacgtggtggaacatttcaaaactactatatggtattgcaacctgaaatgttgttcgcaagttcaattt--tatatgatagtattacttca |
40078895 |
T |
|
| Q |
123 |
ggccagtttt-----taagaggaattagttgatactgtatcattttttattgcctgctcaaaaacagtaccatggaggaaccaactttgaccgaagtacc |
217 |
Q |
| |
|
| | || ||||||||||||| | ||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40078896 |
cggaaaaattggctctaagaggaattagctaatactttatcattttttattgcttgcccaaaaacagtaccatggaggaaccaactttgaccgaagtacc |
40078995 |
T |
|
| Q |
218 |
ggcggaccattcattgctacaagttacgattttgatgcaccgattgatgaatatggtatg--tccttcagcctacatactaaatatatgatgttcatgtt |
315 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| |||||||||||||||||| ||||||||| || |||| ||| |||| | ||||| |||||||||| |
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|
| T |
40078996 |
ggcggacctttcattgctacaagttatgattatgatgcaccgattgatgagtatggtatgactctttcaaccttaatac-gagtatattttgttcatgtt |
40079094 |
T |
|
| Q |
316 |
gtagccatcacaaatgtaccactggtaata-------catcgaagaagataaattaataatatcacatgcatagtttatttcttatatgcacaagagaaa |
408 |
Q |
| |
|
||||||||| |||||| ||||||||||||| | |||||||||||||||||||||||| ||| |||||||| |||||| ||| | |||||||| |
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|
| T |
40079095 |
gtagccatcgcaaatgcaccactggtaatacctcggtcctcgaagaagataaattaataatattacacgcatagttattttcttttatttagaagagaaa |
40079194 |
T |
|
| Q |
409 |
ttacactggacaat----tgtgt-tttttaatatatttgctatatactgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcacaagg |
503 |
Q |
| |
|
|||||||||||||| ||||| | |||||||| | | ||||| ||||||||||||||||||||| ||||||||||||||||||||| | ||||||| |
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|
| T |
40079195 |
ttacactggacaattttctgtgtgtgtttaatatctctactatacgctgcaggaattattaggcagcaaaagtggggtcatcttaaagatgtacacaagg |
40079294 |
T |
|
| Q |
504 |
ccgtaaagctttgtgaggaagcgttaatagctacagaacccaagattacttctcttggtccaaacctagaggtagaggcggtttatattgaaatttttg |
602 |
Q |
| |
|
|| ||||||||||||| ||||| |||||||||| || ||||||||| | |||||||||| ||||||||||||| ||| ||| | |||||||||||||| |
|
|
| T |
40079295 |
ccataaagctttgtgaagaagcactaatagctactgatcccaagatttcatctcttggtcaaaacctagaggtataggtggtatgtattgaaatttttg |
40079393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 40086571 - 40086644
Alignment:
| Q |
24 |
gctttttccaacgaggtggaacatttcaaaattattatatggtattgcaacctgaaatgttcttcacaagttca |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40086571 |
gctttttccaacgaggtggaacatttcaaaattactatatggtattgcaacctgaaatgttcttcacaagttca |
40086644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 451 - 534
Target Start/End: Complemental strand, 22014313 - 22014230
Alignment:
| Q |
451 |
tgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaagcgttaatagc |
534 |
Q |
| |
|
||||||| |||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||| ||||| || ||||| |
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|
| T |
22014313 |
tgcaggagatattagacagcccaaatggggtcatcttaaagatttgcacaaggccataaagctttgtgaagaagcattgatagc |
22014230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 277
Target Start/End: Complemental strand, 22014530 - 22014420
Alignment:
| Q |
167 |
ttgcctgctcaaaaacagtaccatggaggaaccaactttgaccgaagtaccggcggaccattcattgctacaagttacgattttgatgcaccgattgatg |
266 |
Q |
| |
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|||| ||||| |||| ||||||||||||| || ||||||| |||| || || ||||| |||||| | || ||||| |||| ||||||||| ||||||| |
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|
| T |
22014530 |
ttgcttgctctaaaatagtaccatggagggactaactttggtcgaacaacgggtggacctttcatttcaacgagttatgattatgatgcacccattgatg |
22014431 |
T |
|
| Q |
267 |
aatatggtatg |
277 |
Q |
| |
|
| ||||||||| |
|
|
| T |
22014430 |
agtatggtatg |
22014420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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