View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8288_high_4 (Length: 358)

Name: NF8288_high_4
Description: NF8288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8288_high_4
NF8288_high_4
[»] chr5 (1 HSPs)
chr5 (78-358)||(42327175-42327455)


Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 78 - 358
Target Start/End: Complemental strand, 42327455 - 42327175
Alignment:
Q  78 gacaaaatgttaaggaagtttattaactaactattcaattccaatccatttataattttcatttcctttttctaaaggggtttatagtaaatgacgcaaa 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42327455 gacaaaatgttaaggaagtttattaactaactattcaattccaatccatttataattttcatttcctttttctaaaggggtttatagtaaatgacgcaaa 42327356  T
Q  178 tgaaatcagtattattatcaagttcataataaaacgaaatctttatttttccttttaagagggaatattgttttgtattttacgaagaaagggaatgttg 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42327355 tgaaatcagtattattatcaagttcataataaaacgaaatctttatttttccttttaagagggaatattgttttgtattttacgaagaaagggaatgttg 42327256  T
Q  278 ttttcaaatgatgaaataaatagcttaccttataagctcaaaaacgcgtacgcgtgtttcaatcaagctgtaacaaagaca 358  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42327255 ttttcaaatgatgaaataaatagctttccttataagctcaaaaacgcgtacgcgtgtttcaatcaagctgtaacaaagaca 42327175  T

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