View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8288_low_11 (Length: 241)
Name: NF8288_low_11
Description: NF8288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8288_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 7340603 - 7340397
Alignment:
| Q |
18 |
cccttcaaccccttataaaacttccctttcccctttctcatttttcgtcatcacaaacacacgaacctttttgcttatatttttaaattccacagttact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7340603 |
cccttcaaccccttataaaacttccctttcccgtttctcatttttcatcatcacaaacacacgaacctttttgcttatattgttaaattccacagttact |
7340504 |
T |
|
| Q |
118 |
acacacaaaatgttcaatcaagagaaactgatgcattaccaagtagaaccatcatggagctactacatgagagtaagaacaatggaagaagatcaaatgg |
217 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7340503 |
acacacaaaatgttcaatcaagaaaaactcatgcattaccaagtggaagcatcatggagctactacatgagagtaagaacaatggaagaagatcaaatgg |
7340404 |
T |
|
| Q |
218 |
agagaat |
224 |
Q |
| |
|
||||||| |
|
|
| T |
7340403 |
agagaat |
7340397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 7299969 - 7300070
Alignment:
| Q |
126 |
aatgttcaatcaagagaaactgatgcattaccaagtagaaccatcatggagctactacatgagagtaagaacaatggaagaagatcaaatggagagaata |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7299969 |
aatgttcaatcaagagaaactgatgcattaccaagtagaaccatcatggagctactacatgagagtaagaacaatggaagaagatcaaatggagagaata |
7300068 |
T |
|
| Q |
226 |
at |
227 |
Q |
| |
|
|| |
|
|
| T |
7300069 |
at |
7300070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 7333706 - 7333605
Alignment:
| Q |
126 |
aatgttcaatcaagagaaactgatgcattaccaagtagaaccatcatggagctactacatgagagtaagaacaatggaagaagatcaaatggagagaata |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7333706 |
aatgttcaatcaagagaaactgatgcattaccaagtagaaccatcatggagctactacatgagagtaagaacaatggaagaagatcaaatggagagaata |
7333607 |
T |
|
| Q |
226 |
at |
227 |
Q |
| |
|
|| |
|
|
| T |
7333606 |
at |
7333605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 7376402 - 7376330
Alignment:
| Q |
128 |
tgttcaatcaagagaaactgatgcattaccaagtagaaccatcat---ggagctactacatgagagtaagaaca |
198 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7376402 |
tgttcaatcaagagaaacacatgcattgccaagt-gaaccatcatcatggagctactacatgagagtaagaaca |
7376330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University