View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8288_low_2 (Length: 678)

Name: NF8288_low_2
Description: NF8288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8288_low_2
NF8288_low_2
[»] chr7 (1 HSPs)
chr7 (21-661)||(46631542-46632182)
[»] chr1 (1 HSPs)
chr1 (43-142)||(15767278-15767380)


Alignment Details
Target: chr7 (Bit Score: 601; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 21 - 661
Target Start/End: Original strand, 46631542 - 46632182
Alignment:
Q  21 tgttccttgtaatgaaatcgtatctactccatctagagttagaaaagcagaaaaaattcacatcaaataaccaaagtaatcattcgagacattgaggaga 120  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46631542 tgttccttgtaatgaaatcgcatctactccatctagagttagaaaagcagaaaaaattcacatcaaataaccaaagtaatcattcgagacattgaggaga 46631641  T
Q  121 taataatttccatccattcttattttatcattatatatatgtcatgtttggataaaaaacttaaagttcaaactcaatgaattagctatgaaggttggta 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  46631642 taataatttccatccattcttattttatcattatatatatgtcatgtttggataaacaacttaaagttcaaactcaatgaattagcaatgaaggttggta 46631741  T
Q  221 aaaatttgaatcattatattgagaaaaagggcaacaaagagaaatataagctgaatatgtctcatgtgtattctttgataaaaatgtatgttacaattat 320  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  46631742 aaaattggaataattatattgagaaaaagggcaacaaagagaaatataagttgaatatgtctcatgtgtattctttgataaaaatgtatattacaattat 46631841  T
Q  321 atggaaaggtgaccccaatgtttatatactgagaatccaaactgactttcctaaatgtaagaaggagactaacaaactatctaacaaaatgataaagcca 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  46631842 atggaaaggtgaccccaatgtttatatactgagaatccaaactgactttcctaaatgtaagaaggagactaacaaactatctaacaaaatgacaaaacca 46631941  T
Q  421 aaatactacaactaaacctacaaagtaattatatttattactccccccacaagctggaggatgcacatcgatgagaccaagcttggaaatcaaatggaga 520  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46631942 aaatactacaactaaacctacaaagtaattacatttattactccccccacaagctggaggatgcacatcgatgagaccaagcttggaaatcaaatggaga 46632041  T
Q  521 aatgctggttttgctagaggttttgttagcagatcagtaatctcggcagcagaagaagtaagaaataatttgatgattcctagttccaatttttctctta 620  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46632042 aatgctggttttgctagaggttttgttagcagatcagtaatctcggcagcagaagaagtaagaaataatttgatgattcctagttccaatttttctctta 46632141  T
Q  621 tgatgtggcaatcgattttgatgtgttttgtcagctcatgg 661  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46632142 tgatgtggcaatcgattttgatgtgttttgtcagctcatgg 46632182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 15767380 - 15767278
Alignment:
Q  43 tctactccatct-agagttagaaaagca---gaaaaaattcacatcaaataaccaaagtaatcattcgagacattgaggagataataatttccatccatt 138  Q
    |||||||||||| || |||||||||| |   |||||||||||||||||||||||||||| |||||||| |||||||| |||||| |||||||||| ||||    
T  15767380 tctactccatcttagggttagaaaagaaccggaaaaaattcacatcaaataaccaaagt-atcattcgggacattgaagagatactaatttccatacatt 15767282  T
Q  139 ctta 142  Q
    ||||    
T  15767281 ctta 15767278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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