View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8288_low_3 (Length: 606)
Name: NF8288_low_3
Description: NF8288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8288_low_3 |
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| [»] scaffold0472 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 77 - 590
Target Start/End: Original strand, 37418102 - 37418630
Alignment:
| Q |
77 |
ttaaaagagttaatattccttatatttgtgacatgacacgggatgtaatagatatgattttgattttatagaatatcatggtatcattattttgcaaata |
176 |
Q |
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| T |
37418102 |
ttaaaagagataatattccttatatttgtgacatgacacgggatgtaatagatatgattttgattttatagaatattatggtatcattattttgcaaata |
37418201 |
T |
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| Q |
177 |
tactagtgttttatagaacattacgttataagatctgatctag---------------agaaaaaattcagtctatatttctccaaatgaaagaggttga |
261 |
Q |
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| T |
37418202 |
tactagtgttttatagaacattaagttataagatctgatctaggttcaaaatatgaagagaaaaaattgagtctatatttctccaaatgaaagaggttga |
37418301 |
T |
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| Q |
262 |
gagagtataaaatagagaggatcttgacttaatttacattaattgcaaataactagaacttgnnnnnnnnacataaggtagctacgaacttaatttacat |
361 |
Q |
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| T |
37418302 |
gagagtataaaatggagaggatcttgacttaatttacattaattgcaaataattagaaattgttttttttacataacgtagctacgaacttaatttacat |
37418401 |
T |
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| Q |
362 |
tcacgttcaacgaaaaccatatatataaaagataatttgttttatagaaatattagtgttaggaacactctccttttattaattatgatgatagaataag |
461 |
Q |
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| T |
37418402 |
tgacgttcaacgaaaatcatatatataaaagataatttgttttataaaaatattagtgttaggaacactctccttttattaattgtgatgatagaataag |
37418501 |
T |
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| Q |
462 |
ttttcgttgaatgttggtgtaaaattaatttacaacaacattatatcacaattgtccattaaactcttttattgcaaaactcttttaaattttacattct |
561 |
Q |
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| T |
37418502 |
ttttcgttgaatgttggtgcaaaattaatttacaacaacattatatcacaattgtccattaaactcttttattgcaaaactcttttaaattttacattct |
37418601 |
T |
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| Q |
562 |
tgcatacattaattttttcacaaattctt |
590 |
Q |
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| T |
37418602 |
tgcatacattaattttttcacaaattctt |
37418630 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 8462487 - 8462532
Alignment:
| Q |
9 |
tagataatactcaaagctcatttgtagagataagctaagcctttat |
54 |
Q |
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| T |
8462487 |
tagacaatattcaaagctcatttgtagagataagctaagcctttat |
8462532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0472 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0472
Description:
Target: scaffold0472; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 12988 - 13053
Alignment:
| Q |
225 |
aaattcagtctatatttctccaaatgaaagaggttgagagagtataaaatagagaggatcttgact |
290 |
Q |
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| T |
12988 |
aaattgagtctatatctctccatatgaaagaaagtgagagagtacaaaatggagaggatcttgact |
13053 |
T |
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