View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8288_low_4 (Length: 532)
Name: NF8288_low_4
Description: NF8288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8288_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 27 - 524
Target Start/End: Original strand, 8812603 - 8813110
Alignment:
| Q |
27 |
cggggttctagcaaacccatttactattgattaaatgtatttcccccttatgtnnnnnnntacatatgcaatttctcctacatgataacaatcgggaaaa |
126 |
Q |
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| T |
8812603 |
cggggttcaagcaaacccatttactattgattaaatgtatttcccccttatgtaaaaaaatacatatgcaatttctcctagatgataacaatcggggaaa |
8812702 |
T |
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| Q |
127 |
gtaatgctaacaacacacgttttaacag----------cacatttgttttatcggttaaaattcataagtttcataaaatgttatggaacctaaaaattt |
216 |
Q |
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| T |
8812703 |
ataatgctaacaacacactttttaacaataattttcaacacatttgttttatcggttaaaattcataagtttcataaaatgttatggaacctacaaattt |
8812802 |
T |
|
| Q |
217 |
taaaagtgagttaaactgtgtgttagaaccgcttaatgtatagagaatatatcatgctgtacaccacaaaagggtggaaggcccacatgttagtaccctt |
316 |
Q |
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| T |
8812803 |
taaaagtgagttaaaccgtgtgttagaaccgcttcatgtatagagaatatatcatgctgtacaccacaaaagggtggaaggcccacatgttagtaccctt |
8812902 |
T |
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| Q |
317 |
caattcttcctctatgttgcctatattcatatggttagtttaaacacatttatagatggcacctctagctggaaagttggtgcgatgcataactattttt |
416 |
Q |
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| T |
8812903 |
caattcttcctctatgttgcctatattcatatggttagtttaaacacatttatagatggcacctctagctggaaagttggtgcgatgcataactattttt |
8813002 |
T |
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| Q |
417 |
ctttactgttgtttggcttataattttccaacataaatcaaatcatgcttttttccataagcatatttagctttttagccaagtggggtggcacttttgg |
516 |
Q |
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| T |
8813003 |
ctttactgttgtttggcttataattttccaacataaatcaaatcatgcttttttccataagcatatttagctttttagccaagtggggtggcacttttgg |
8813102 |
T |
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| Q |
517 |
ttcttctc |
524 |
Q |
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| T |
8813103 |
ttcttctc |
8813110 |
T |
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