View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8288_low_5 (Length: 393)

Name: NF8288_low_5
Description: NF8288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8288_low_5
NF8288_low_5
[»] chr1 (8 HSPs)
chr1 (1-376)||(48655621-48655996)
chr1 (165-376)||(48628118-48628329)
chr1 (172-376)||(48652320-48652524)
chr1 (165-376)||(48618931-48619142)
chr1 (130-322)||(48660734-48660926)
chr1 (165-376)||(11546424-11546635)
chr1 (165-318)||(48666361-48666514)
chr1 (165-327)||(48584535-48584697)
[»] chr3 (1 HSPs)
chr3 (220-376)||(19666287-19666443)
[»] chr8 (2 HSPs)
chr8 (165-376)||(27223157-27223368)
chr8 (165-376)||(27227348-27227559)


Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 48655621 - 48655996
Alignment:
Q  1 aaaactactacatgagctctccacctaataagcagagtactttctctttttggaattttcatacctaaatttattaacccctaggatagcatttgggtga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  48655621 aaaactactacatgagctctccacctaataagcagagtactttctctttttggaattttcatacctaaatttattatcccctaggatagcacttgggtga 48655720  T
Q  101 cattgtttccgctatgggtagtttatcatatcttctgaaaattaacagcgccttgtttcgcaacgtcttcgataaatgcatcaagatatcggtcggagga 200  Q
     ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48655721 aattgtttcccctatgggtagtttatcatatcttctgaaaattaacagcgccttgtttcgcaacttcttcgataaatgcatcaagatatcggtcggagga 48655820  T
Q  201 tccacctacggcaactgcatcctccgctgccttcttccacttgattgcatttttcttcaactcctctgctttttcccctgttgtagcttccaacaagcac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48655821 tccacctacggcaactgcatcctccgctgccttcttccacttgattgcatttttcttcaactcctctgctttttcccctgttgtagcttccaacaagcac 48655920  T
Q  301 ttcttcacctcatctcttgttatcaatctgttttcagctccactataacccaatctaatccctacaccaaaaacat 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48655921 ttcttcacctcatctcttgttatcaatctgttttcagctccactataacccaatctaatccctacaccaaaaacat 48655996  T

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Target: chr1; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 165 - 376
Target Start/End: Original strand, 48628118 - 48628329
Alignment:
Q  165 gtcttcgataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctgccttcttccacttgattgcatttttcttcaactcc 264  Q
    |||||| ||||||||||||||||  |  || ||||||||||| ||||| ||||| ||||| ||  ||||||||||||| |||||||||||||||||||||    
T  48628118 gtcttccataaatgcatcaagattccaatcagaggatccaccaacggccactgcttcctctgcctccttcttccacttcattgcatttttcttcaactcc 48628217  T
Q  265 tctgctttttcccctgttgtagcttccaacaagcacttcttcacctcatctcttgttatcaatctgttttcagctccactataacccaatctaatcccta 364  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||  |||||||      |||||||||||||||||||||||    
T  48628218 tctgctttttcccctgttgttgcttccaataagcacttcttcacctcatctcttgttaccaacttgttttccataagactataacccaatctaatcccta 48628317  T
Q  365 caccaaaaacat 376  Q
    ||||||||||||    
T  48628318 caccaaaaacat 48628329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 172 - 376
Target Start/End: Original strand, 48652320 - 48652524
Alignment:
Q  172 ataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctgccttcttccacttgattgcatttttcttcaactcctctgctt 271  Q
    ||||||||||||||||   | || || |||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48652320 ataaatgcatcaagatgcagatcagatgatccacctatggcaaccgcatcctccgctgctttcttccacttgattgcatttttcttcaactcctctgctt 48652419  T
Q  272 tttcccctgttgtagcttccaacaagcacttcttcacctcatctcttgttatcaatctgttttcagctccactataacccaatctaatccctacaccaaa 371  Q
    ||||||| |   | ||||||||||||||||||||||||||||||||||| | |||| | ||||||||   |||||||||||| ||||||||||| |||||    
T  48652420 tttccccagccattgcttccaacaagcacttcttcacctcatctcttgtcaccaatttattttcagcatgactataacccaacctaatccctactccaaa 48652519  T
Q  372 aacat 376  Q
    |||||    
T  48652520 aacat 48652524  T

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Target: chr1; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 165 - 376
Target Start/End: Complemental strand, 48619142 - 48618931
Alignment:
Q  165 gtcttcgataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctgccttcttccacttgattgcatttttcttcaactcc 264  Q
    |||||| |||||| |||||||||  || || ||||||||||| | ||| ||||| || |||||   |||||||||||| |||||||||||||||||||||    
T  48619142 gtcttccataaattcatcaagattccgatcagaggatccaccaatggccactgcttcatccgccttcttcttccacttcattgcatttttcttcaactcc 48619043  T
Q  265 tctgctttttcccctgttgtagcttccaacaagcacttcttcacctcatctcttgttatcaatctgttttcagctccactataacccaatctaatcccta 364  Q
    ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||  ||| | ||||||     || ||||||||||||||||||||    
T  48619042 tctgctttttcccctgttgtagcttccaataaacactttttcacctcatctcttgttactaatttattttcaatcataccataacccaatctaatcccta 48618943  T
Q  365 caccaaaaacat 376  Q
    ||||||||||||    
T  48618942 caccaaaaacat 48618931  T

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Target: chr1; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 130 - 322
Target Start/End: Original strand, 48660734 - 48660926
Alignment:
Q  130 atcttctgaaaattaacagcgccttgtttcgcaacgtcttcgataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctg 229  Q
    |||||||||| |||| ||| ||| ||||||  || ||||| ||||||||||||||||| |||||| ||||| ||||| || || |  |||||||| ||||    
T  48660734 atcttctgaatattaccagtgccatgtttcttaatgtcttggataaatgcatcaagatgtcggtccgaggaaccaccgactgccatcgcatcctctgctg 48660833  T
Q  230 ccttcttccacttgattgcatttttcttcaactcctctgctttttcccctgttgtagcttccaacaagcacttcttcacctcatctcttgtta 322  Q
    || |||||||||| ||||||||||  ||||||  ||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||    
T  48660834 ccgtcttccacttcattgcattttgtttcaacctctctgctttttcccctgttattgcttccaataagcacttcttcacctcatctcttgtta 48660926  T

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Target: chr1; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 165 - 376
Target Start/End: Original strand, 11546424 - 11546635
Alignment:
Q  165 gtcttcgataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctgccttcttccacttgattgcatttttcttcaactcc 264  Q
    |||||| | |||| |||||||||  || || ||||||||||| | ||| ||||| ||||| ||    ||||||||||| ||||||||||||||||| |||    
T  11546424 gtcttccaaaaattcatcaagattccgatcagaggatccaccaatggccactgcttcctcagcctttttcttccactttattgcatttttcttcaaatcc 11546523  T
Q  265 tctgctttttcccctgttgtagcttccaacaagcacttcttcacctcatctcttgttatcaatctgttttcagctccactataacccaatctaatcccta 364  Q
    || |||||||||||| |||| ||||| || |||||||| |||||||||||||||||||  ||| | ||||||     || ||||||||||||||||||||    
T  11546524 tcagctttttcccctattgttgcttctaataagcactttttcacctcatctcttgttacaaatttattttcaatcataccataacccaatctaatcccta 11546623  T
Q  365 caccaaaaacat 376  Q
    ||||||||||||    
T  11546624 caccaaaaacat 11546635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 165 - 318
Target Start/End: Original strand, 48666361 - 48666514
Alignment:
Q  165 gtcttcgataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctgccttcttccacttgattgcatttttcttcaactcc 264  Q
    |||||| |||||||||||||||| |||||| ||||| ||||| || || ||||| |||||||| ||||| ||| ||||| |||||||||||||||||  |    
T  48666361 gtcttccataaatgcatcaagatgtcggtccgaggaaccaccaaccgccactgcttcctccgccgcctttttcaacttggttgcatttttcttcaacgtc 48666460  T
Q  265 tctgctttttcccctgttgtagcttccaacaagcacttcttcacctcatctctt 318  Q
    ||||||||||||||||||||| ||||||| ||||| ||||| |  |||||||||    
T  48666461 tctgctttttcccctgttgtaacttccaataagcatttctttaaatcatctctt 48666514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 165 - 327
Target Start/End: Original strand, 48584535 - 48584697
Alignment:
Q  165 gtcttcgataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctgccttcttccacttgattgcatttttcttcaactcc 264  Q
    |||||| |||||  |||||||||  || || ||||||||||| ||||| |  || ||||||||   ||||||||||||| ||||||||| |||||||| |    
T  48584535 gtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttgtttgcattttgcttcaacttc 48584634  T
Q  265 tctgctttttcccctgttgtagcttccaacaagcacttcttcacctcatctcttgttatcaat 327  Q
    ||||||||||| ||| |||| |||||||| || ||||||||||||||||||||||||| ||||    
T  48584635 tctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaat 48584697  T

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Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 220 - 376
Target Start/End: Complemental strand, 19666443 - 19666287
Alignment:
Q  220 tcctccgctgccttcttccacttgattgcatttttcttcaactcctctgctttttcccctgttgtagcttccaacaagcacttcttcacctcatctcttg 319  Q
    |||||||| || |||||||||||||||||||||| ||||||||||||| ||||||| ||| |||| |||||||| |||||||||||||| ||||||||||    
T  19666443 tcctccgccgctttcttccacttgattgcattttgcttcaactcctctcctttttctcctattgttgcttccaataagcacttcttcacttcatctcttg 19666344  T
Q  320 ttatcaatctgttttcagctccactataacccaatctaatccctacaccaaaaacat 376  Q
    ||| |||| | || |||||   |||||||||||||||||| || || ||||||||||    
T  19666343 ttaccaatttattatcagcatgactataacccaatctaataccaactccaaaaacat 19666287  T

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Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 165 - 376
Target Start/End: Original strand, 27223157 - 27223368
Alignment:
Q  165 gtcttcgataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctgccttcttccacttgattgcatttttcttcaactcc 264  Q
    |||||| |||||||||||||||| | | || ||||||||||||| |||||| ||| |||| ||||||||||||||||||||||| |||| ||||||||||    
T  27223157 gtcttccataaatgcatcaagatgttgatcagaggatccacctatggcaacagcagcctctgctgccttcttccacttgattgcgttttgcttcaactcc 27223256  T
Q  265 tctgctttttcccctgttgtagcttccaacaagcacttcttcacctcatctcttgttatcaatctgttttcagctccactataacccaatctaatcccta 364  Q
    |||||||||   ||||   | |||||  | ||||| |||||||||||||||||   || |||| ||||||||||   || | |||||||||| |||||||    
T  27223257 tctgcttttggtcctgccattgcttctgataagcatttcttcacctcatctctacataccaatttgttttcagcctgaccacaacccaatctgatcccta 27223356  T
Q  365 caccaaaaacat 376  Q
    | ||||||||||    
T  27223357 ccccaaaaacat 27223368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 165 - 376
Target Start/End: Original strand, 27227348 - 27227559
Alignment:
Q  165 gtcttcgataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctgccttcttccacttgattgcatttttcttcaactcc 264  Q
    |||||| ||||||||||||| ||  || || ||||| |||||||| ||||||||| |||||||||||||||||||||||||||  |||| |||||||  |    
T  27227348 gtcttccataaatgcatcaatatgccgatcagaggaaccacctaccgcaactgcagcctccgctgccttcttccacttgattgtgttttgcttcaacatc 27227447  T
Q  265 tctgctttttcccctgttgtagcttccaacaagcacttcttcacctcatctcttgttatcaatctgttttcagctccactataacccaatctaatcccta 364  Q
    |||||||||  |||||   | |||||||| ||||| |||||||||||||||||   || |||||| ||||| ||   ||||||||||||||| | |||||    
T  27227448 tctgcttttggccctgccattgcttccaataagcatttcttcacctcatctctacataccaatctattttccgcctgactataacccaatctgaccccta 27227547  T
Q  365 caccaaaaacat 376  Q
    |  |||||||||    
T  27227548 cctcaaaaacat 27227559  T

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