View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8288_low_7 (Length: 358)

Name: NF8288_low_7
Description: NF8288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8288_low_7
NF8288_low_7
[»] chr5 (1 HSPs)
chr5 (78-358)||(42327175-42327455)


Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 78 - 358
Target Start/End: Complemental strand, 42327455 - 42327175
Alignment:
Q  78 gacaaaatgttaaggaagtttattaactaactattcaattccaatccatttataattttcatttcctttttctaaaggggtttatagtaaatgacgcaaa 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42327455 gacaaaatgttaaggaagtttattaactaactattcaattccaatccatttataattttcatttcctttttctaaaggggtttatagtaaatgacgcaaa 42327356  T
Q  178 tgaaatcagtattattatcaagttcataataaaacgaaatctttatttttccttttaagagggaatattgttttgtattttacgaagaaagggaatgttg 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42327355 tgaaatcagtattattatcaagttcataataaaacgaaatctttatttttccttttaagagggaatattgttttgtattttacgaagaaagggaatgttg 42327256  T
Q  278 ttttcaaatgatgaaataaatagcttaccttataagctcaaaaacgcgtacgcgtgtttcaatcaagctgtaacaaagaca 358  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42327255 ttttcaaatgatgaaataaatagctttccttataagctcaaaaacgcgtacgcgtgtttcaatcaagctgtaacaaagaca 42327175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University