View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8288_low_8 (Length: 330)
Name: NF8288_low_8
Description: NF8288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8288_low_8 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 315
Target Start/End: Original strand, 31295077 - 31295382
Alignment:
| Q |
13 |
tgaaactatttatcgatttttattttctttcctccttattggtggtagatttcaatgttatggacttttgtgtagatgatattgtgacgcaacttaaaat |
112 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||| |
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| T |
31295077 |
tgaaactatttatcgatttttattttctttcctccttgttggtggtagatttcaatgttatggatttttgtgtagataatattgtgatgcaacttaaaat |
31295176 |
T |
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| Q |
113 |
gattatacgatgcgatatcataacttattccatctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagcaaaccaatg- |
211 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31295177 |
gattatacgatgcgatatcatatcttattccacctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagcaaaccaatga |
31295276 |
T |
|
| Q |
212 |
--aggtgatgatggaaagggaaatagcacaaaagaagaactttctaagggtttgacttgagagtgtataatactgtgatttttgtgtatatctgaaggtt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31295277 |
gcaggtgatgatggaaagggaaatagcacaaaagaagaactttctaagggtttgacttgagagtgtataatactgtgatttttgtgtatatctgaaggtt |
31295376 |
T |
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| Q |
310 |
attctt |
315 |
Q |
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|||||| |
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| T |
31295377 |
attctt |
31295382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 42301858 - 42301624
Alignment:
| Q |
13 |
tgaaactatttatcgatttttattttctttcctccttattggtggtagatttcaatgttatggacttttgtgtagatgatattgtgacgcaacttaaaat |
112 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| || |||||||||| |
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| T |
42301858 |
tgaaactatttatcgatttttatttcctttcctccttattggtggtagatttcaatgttatggatttttgtgtagataatattgtaacataacttaaaat |
42301759 |
T |
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| Q |
113 |
gattatacgatgcgatatcataacttattccatctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagcaaaccaatg- |
211 |
Q |
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|||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
42301758 |
gattatacgatgtgatatcataacttattccacctcaaagtttgttttgctttgataagtaatttcatattttgtgtttgcaggaagagcaaacaaatga |
42301659 |
T |
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| Q |
212 |
--aggtgatgatggaaagggaaatagcacaaaaga |
244 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
42301658 |
gcaggtgatgatggaaagggaaatagcacaaaaga |
42301624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 2368079 - 2367845
Alignment:
| Q |
13 |
tgaaactatttatcgatttttattttctttcctccttattggtggtagatttcaatgttatggacttttgtgtagatgatattgtgacgcaacttaaaat |
112 |
Q |
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||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| | | |||||| |
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| T |
2368079 |
tgaaactatttatcgttttttattttctttcccccttattggtggtagatttcaatgttatggatttttgtgtagataatattgtaacgtagcataaaat |
2367980 |
T |
|
| Q |
113 |
gattatacgatgcgatatcataacttattccatctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagcaaaccaatg- |
211 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| |||| |
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| T |
2367979 |
tattatacgatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaatttcatattttatgtttgcatgaagagcaaacaaatga |
2367880 |
T |
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| Q |
212 |
--aggtgatgatggaaagggaaatagcacaaaaga |
244 |
Q |
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||| ||||||||||||||||||||||||||||| |
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| T |
2367879 |
gcaggcgatgatggaaagggaaatagcacaaaaga |
2367845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 103 - 244
Target Start/End: Complemental strand, 93723 - 93579
Alignment:
| Q |
103 |
aacttaaaatgattatacgatgcgatatcataacttattccatctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagc |
202 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
93723 |
aacttaaaatgattatacaatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaacttgatattttgtgtttgcaggaagagc |
93624 |
T |
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| Q |
203 |
aaaccaatg---aggtgatgatggaaagggaaatagcacaaaaga |
244 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
93623 |
aaacaaatgagcaggtgatgatggaaagggaaatagcacaaaaga |
93579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 111 - 244
Target Start/End: Complemental strand, 22761898 - 22761762
Alignment:
| Q |
111 |
atgattatacgatgcgatatcataacttattccatctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagcaaaccaat |
210 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
22761898 |
atgattatacgatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaatttcatattttgtgtttgcaggaagagcaaacaaat |
22761799 |
T |
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| Q |
211 |
gag---gtgatgatggaaagggaaatagcacaaaaga |
244 |
Q |
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||| ||||||||||||||||||||||||||||||| |
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| T |
22761798 |
gagcaagtgatgatggaaagggaaatagcacaaaaga |
22761762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 111 - 244
Target Start/End: Original strand, 18314373 - 18314509
Alignment:
| Q |
111 |
atgattatacgatgcgatatcataacttattccatctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagcaaaccaat |
210 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
18314373 |
atgattatacgatgcaatatcataacttattccacctcaatgtttgttttgctttgataagtaatttcatattttgtgtttgcaggaagagcaaacaaat |
18314472 |
T |
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| Q |
211 |
g---aggtgatgatggaaagggaaatagcacaaaaga |
244 |
Q |
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| T |
18314473 |
gagcaggtgatgatggaaagggaaatagcacaaaaga |
18314509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 7863362 - 7863407
Alignment:
| Q |
270 |
gagtgtataatactgtgatttttgtgtatatctgaaggttattctt |
315 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7863362 |
gagtttataatactgtgatttttgtgtatatctgaaggttattctt |
7863407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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