View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8288_low_9 (Length: 323)
Name: NF8288_low_9
Description: NF8288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8288_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 26 - 310
Target Start/End: Original strand, 42326896 - 42327179
Alignment:
| Q |
26 |
tcctcctcctccgtaagattcagagtaatggacggtatctttgaccttgtggaatccattcttgaaaactccgaatccaaacagcattccgattgtgatc |
125 |
Q |
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| T |
42326896 |
tcctcctcctccgtaagattcagagtaatggacggtatctttgaccttgtggaatccattcttgaaaactccgaatccaaacagcattccgattgtgatc |
42326995 |
T |
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| Q |
126 |
acaaccagaatcaagcatacgcataacatgcacactttgcccggacaacacatctttaatcaacgatcgtcgaagaaaaagagtttcaatannnnnnnnc |
225 |
Q |
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| T |
42326996 |
acaaccagaatcaagcatacgcataacatgcacactttgcccggacaacacatctttaatcaacgatcgtcgaagaaaaagagtttcaata-attttttc |
42327094 |
T |
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| Q |
226 |
ctcttggtatttctgatcttgtgaaaaaattgtgaagataatgtggtgaatttaaaagaaaatgaagaagttaacgttggtgtct |
310 |
Q |
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| T |
42327095 |
ctcttggtatttctgatcttgtgaaaaaattgtgaagataatgtggtgaatttaaaagaaaatgaagaaggtaacgttggtgtct |
42327179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 29 - 194
Target Start/End: Original strand, 42319509 - 42319674
Alignment:
| Q |
29 |
tcctcctccgtaagattcagagtaatggacggtatctttgaccttgtggaatccattcttgaaaactccgaatccaaacagcattccgattgtgatcaca |
128 |
Q |
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|||||| |||||||| ||||||||||| ||||| |||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||| |
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| T |
42319509 |
tcctccgccgtaagaatcagagtaatgaacggtgtctttgactttgtggaaaccattcttgaatactccgaatccaaacagaattccgatcgtgatcaca |
42319608 |
T |
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| Q |
129 |
accagaatcaagcatacgcataacatgcacactttgcccggacaacacatctttaatcaacgatcg |
194 |
Q |
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|||| ||||||||||| ||||||| |||| | |||||| ||||||||||||| ||| |||||||| |
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| T |
42319609 |
accacaatcaagcatatgcataacgtgcagattttgcctggacaacacatctcgaatgaacgatcg |
42319674 |
T |
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