View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8289_high_10 (Length: 306)
Name: NF8289_high_10
Description: NF8289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8289_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 7 - 289
Target Start/End: Original strand, 14875207 - 14875480
Alignment:
| Q |
7 |
tatggaggtgttgtatatataatataatgcaccatatgtaatggatgtaaacggatttgatgctcttaatgttaaaggaagtcttgtaccnnnnnnnnnn |
106 |
Q |
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| T |
14875207 |
tatggaggtgttgtatatataatataatgcaccatatgtaatggatgtaaacggatttgatgctgttaatgttaaaggaagtcttgtacc-aaaaaaaaa |
14875305 |
T |
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| Q |
107 |
nntgtttaaggaagtcttagtctcaattgttggatttgtttatatcacacaagataagggtttgataaagttttgtacccnnnnnnnnnnnnnnnnnnng |
206 |
Q |
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| T |
14875306 |
tatgtttaaggaagtcttagtctcaattgttggatttgtttatatcacacaagat-agggtttgataaagttttgtaccc-------aaaaaaaaaaagg |
14875397 |
T |
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| Q |
207 |
gttggtaaagttgtaacctagatcatctgataaagattcaatggctgannnnnnnnnctttctgtaattgtatttatttgtac |
289 |
Q |
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| T |
14875398 |
gttggtaaagttgtaacctagatcatctgataaagattcaatggctgatttttttttctttctgtaattgtatttatttgtac |
14875480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 14790115 - 14790172
Alignment:
| Q |
109 |
tgtttaaggaagtctt---agtctcaattgttggatttgtttatatcacacaagataa |
163 |
Q |
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| T |
14790115 |
tgtttaaggaagtcttcttagtctcaattgttggatttgtttatatcacacaagataa |
14790172 |
T |
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