View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8289_high_14 (Length: 237)

Name: NF8289_high_14
Description: NF8289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8289_high_14
NF8289_high_14
[»] chr6 (1 HSPs)
chr6 (15-219)||(13610352-13610556)
[»] chr4 (2 HSPs)
chr4 (111-215)||(31246302-31246406)
chr4 (29-82)||(13610727-13610780)
[»] chr2 (3 HSPs)
chr2 (29-82)||(43325362-43325415)
chr2 (29-82)||(43317705-43317758)
chr2 (29-82)||(8861884-8861937)
[»] chr8 (1 HSPs)
chr8 (29-82)||(39317322-39317375)
[»] chr5 (4 HSPs)
chr5 (29-82)||(14197697-14197750)
chr5 (29-82)||(5711782-5711835)
chr5 (29-81)||(10365201-10365253)
chr5 (29-81)||(38477487-38477539)
[»] scaffold0122 (1 HSPs)
scaffold0122 (29-82)||(11654-11707)
[»] chr7 (3 HSPs)
chr7 (29-82)||(8227120-8227173)
chr7 (29-82)||(9626466-9626519)
chr7 (36-84)||(29722000-29722048)
[»] chr3 (1 HSPs)
chr3 (29-82)||(24912592-24912645)
[»] chr1 (3 HSPs)
chr1 (29-82)||(24029811-24029864)
chr1 (29-82)||(45931645-45931698)
chr1 (29-69)||(42824708-42824748)


Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 13610556 - 13610352
Alignment:
Q  15 atgaactaacggactttttaatccatccattaaaattcaaatccatattcatccattccatccattttacccatactcgtaaccataggattgtagtacc 114  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13610556 atgaactaacggactttttaatccatccattagaattcaaatccatattcatccattccatccattttacccatactcgtaaccatatgattgtagtacc 13610457  T
Q  115 tttgttcccttccatagttgcctgatgttgctagaacgtaggatcaattcaacaagtttatccggctgaaaacttgatggcaaacatgtgaaaggatatt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13610456 tttgttcccttccatagttgcctgatgttgctagaacgtaggatcaattcaacaagtttatccggctgaaaacttgatggcaaacatgtgaaaggatatt 13610357  T
Q  215 tttcc 219  Q
    |||||    
T  13610356 tttcc 13610352  T

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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 31246406 - 31246302
Alignment:
Q  111 tacctttgttcccttccatagttgcctgatgttgctagaacgtaggatcaattcaacaagtttatccggctgaaaacttgatggcaaacatgtgaaagga 210  Q
    ||||||||| |||| ||||||||||||||||||||||  | |||||| || ||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  31246406 tacctttgtgccctcccatagttgcctgatgttgctacgaggtaggaccagttcaacaagtttatccggctggaaacttgatggcaaacaagtgaaagga 31246307  T
Q  211 tattt 215  Q
    |||||    
T  31246306 tattt 31246302  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 13610727 - 13610780
Alignment:
Q  29 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 82  Q
    ||||| ||| ||||||||| || ||||||||||| |||||| ||||||||||||    
T  13610727 ttttttatcaatccattaagatccaaatccatatccatccaatccatccatttt 13610780  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 43325362 - 43325415
Alignment:
Q  29 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 82  Q
    ||||| |||||||||||| ||| |||||||||||||||||| ||||||||||||    
T  43325362 ttttttatccatccattagaatccaaatccatattcatccaatccatccatttt 43325415  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 43317758 - 43317705
Alignment:
Q  29 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 82  Q
    ||||| || |||||||||| || |||||||||||||||||| ||||||||||||    
T  43317758 tttttgattcatccattaagatccaaatccatattcatccaatccatccatttt 43317705  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 8861937 - 8861884
Alignment:
Q  29 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 82  Q
    ||||| |||||| |||||| || ||||||||||| |||||| ||||||||||||    
T  8861937 tttttgatccattcattaagatccaaatccatatccatccaatccatccatttt 8861884  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 39317375 - 39317322
Alignment:
Q  29 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 82  Q
    ||||| |||||||||||||||| ||||| ||||| |||||| ||||||||||||    
T  39317375 tttttgatccatccattaaaatccaaattcatatccatccaatccatccatttt 39317322  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 14197697 - 14197750
Alignment:
Q  29 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 82  Q
    ||||| ||||||||||||| || ||||||||||| |||||| ||||||||||||    
T  14197697 tttttgatccatccattaagatccaaatccatatccatccaatccatccatttt 14197750  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 5711782 - 5711835
Alignment:
Q  29 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 82  Q
    ||||| ||||||||||||  || ||||||||||| |||||| ||||||||||||    
T  5711782 tttttgatccatccattaggatccaaatccatatccatccaatccatccatttt 5711835  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 10365253 - 10365201
Alignment:
Q  29 tttttaatccatccattaaaattcaaatccatattcatccattccatccattt 81  Q
    ||||| ||||||||||||  || ||||||||||| |||||| |||||||||||    
T  10365253 tttttgatccatccattaggatccaaatccatatccatccaatccatccattt 10365201  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 38477539 - 38477487
Alignment:
Q  29 tttttaatccatccattaaaattcaaatccatattcatccattccatccattt 81  Q
    ||||| ||||||||||||  || ||||||||||| |||||| |||||||||||    
T  38477539 tttttgatccatccattaggatccaaatccatatccatccaatccatccattt 38477487  T

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Target: scaffold0122 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 11707 - 11654
Alignment:
Q  29 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 82  Q
    ||||| ||||||||||||  || |||||||||| ||||||| ||||||||||||    
T  11707 tttttgatccatccattaggatccaaatccataatcatccaatccatccatttt 11654  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 8227120 - 8227173
Alignment:
Q  29 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 82  Q
    ||||| ||||||||||||  || ||||||||||| |||||| ||||||||||||    
T  8227120 tttttgatccatccattaggatccaaatccatatccatccaatccatccatttt 8227173  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 9626519 - 9626466
Alignment:
Q  29 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 82  Q
    ||||| ||| ||||||||| || ||||||||||| |||||| ||||||||||||    
T  9626519 ttttttatcaatccattaagatccaaatccatatccatccaatccatccatttt 9626466  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 29722000 - 29722048
Alignment:
Q  36 tccatccattaaaattcaaatccatattcatccattccatccattttac 84  Q
    |||||||||||||||  |||||||||| ||| || ||||||||||||||    
T  29722000 tccatccattaaaatctaaatccatatccattcaatccatccattttac 29722048  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 24912592 - 24912645
Alignment:
Q  29 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 82  Q
    ||||||||| ||||||||  || ||||||||||| |||||| ||||||||||||    
T  24912592 tttttaatcgatccattaggatccaaatccatatccatccaatccatccatttt 24912645  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 24029811 - 24029864
Alignment:
Q  29 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 82  Q
    ||||| ||||||||||||  || ||||||||||| |||||| ||||||||||||    
T  24029811 tttttgatccatccattaggatccaaatccatatccatccaatccatccatttt 24029864  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 45931645 - 45931698
Alignment:
Q  29 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 82  Q
    ||||| ||||||||||||  || ||||||||||| |||||| ||||||||||||    
T  45931645 tttttgatccatccattaggatccaaatccatatccatccaatccatccatttt 45931698  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 42824708 - 42824748
Alignment:
Q  29 tttttaatccatccattaaaattcaaatccatattcatcca 69  Q
    ||||| ||||||||||||||||  |||||||||||||||||    
T  42824708 tttttgatccatccattaaaatctaaatccatattcatcca 42824748  T

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