View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8289_high_2 (Length: 719)
Name: NF8289_high_2
Description: NF8289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8289_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 528; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 15 - 700
Target Start/End: Complemental strand, 44471780 - 44471093
Alignment:
| Q |
15 |
agagatactagaatttgttatattaaaatattatagttctatgcaattaactaaaattagtctctatatatatgtagtgtaatagactaagnnnnnnnnn |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
44471780 |
agagatactagaatttgttatattaaaatattatagttctatgcaattaactaaaattagtctctatat----gtagtgtaagagactaagttttttttt |
44471685 |
T |
|
| Q |
115 |
nngtggacagtgtaagagactaatgtaaatctcatnnnnnnntgtaacttgattattca---tcttttttaaagagatttgtttatttcttagtttttct |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||| | ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44471684 |
ttgtggacagtgtaagagactaatgtaaatctcataaaaaaatgtaacttgatcattcaatatattttttaaagaaatttgtttatttcttagtttttct |
44471585 |
T |
|
| Q |
212 |
tccgtattaaaacagttattagctggtaaaaacaaacagtaattagaa-gcaaccttatttgagcctacctagctagccctaatacgtattacgctgctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44471584 |
tccgtattaaaacagttattagctggtaaaaacaaacagtaattagaaaggaaccttattcgagcctacctagctagccctaatacgtattacactgctt |
44471485 |
T |
|
| Q |
311 |
ctatatgcttcttgacatttgatctttgacgaaatataataagcatattaattgattccagtaattaatagtgttcgcaataattgacgccaaagggaac |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
44471484 |
ctatatgcttcttgacatttgatctttgacgaaatataataagcatattaattaattctagtaattaatagtgttcgcaataattgacgccaaagggacc |
44471385 |
T |
|
| Q |
411 |
acctgaaggaaggaaagagtcgaagttgaaggtgatgggagggtagtcacggtggtatacgatggcggtctctggtatccaaccatctgttccaacccta |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
44471384 |
acctgaaggaaggaaagagtcgaagttgaaggtgataggagggtagtcacggtggtatacgatggcggtctctggtatccaaccatctcttccaacacta |
44471285 |
T |
|
| Q |
511 |
acaaagtgcatattgcagatttttcctatacaatctgcatgtactgcaaatatatccgtcccacactgcttgaacaaccccgtattaggatctggacttg |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44471284 |
acaaagtgcatattgcagatttttcctatacaatctgcatgtactgcaaatatatccgtcgcacactgcttgaacaaccccgtgttaggatctggacttg |
44471185 |
T |
|
| Q |
611 |
caaaaatctgcaaattatataaagata--tgttttcatattagttttaatctattattttcataggctatatcatgaaaaacttgtgcgaat |
700 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44471184 |
caaaaatctgcaaattatataaagatatgtgttttcatattagttttaatctattattttcataggctatatcatgaaaaacttgtgcgaat |
44471093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 225 - 325
Target Start/End: Complemental strand, 44476199 - 44476099
Alignment:
| Q |
225 |
agttattagctggtaaaaacaaacagtaattagaagcaaccttatttgagcctacctagctagccctaatacgtattacgctgcttctatatgcttcttg |
324 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||| | |||||||||||| ||||||||||||||||||||||||| || | |||||||||||| ||| |
|
|
| T |
44476199 |
agttattagctggtaaaaacaaacagcaattaaaagctatcttatttgagccaacctagctagccctaatacgtattatgcggtttctatatgcttattg |
44476100 |
T |
|
| Q |
325 |
a |
325 |
Q |
| |
|
| |
|
|
| T |
44476099 |
a |
44476099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 404 - 554
Target Start/End: Complemental strand, 44485665 - 44485515
Alignment:
| Q |
404 |
agggaacacctgaaggaaggaaagagtcgaagttgaaggtgatgggagggtagtcacggtggtatacgatggcggtctctggtatccaaccatctgttcc |
503 |
Q |
| |
|
|||||||||| ||||||| ||| ||| ||||||||| || | ||||||||||||| || ||||| | |||| | |||||| |||||||||| |||||| |
|
|
| T |
44485665 |
agggaacacccgaaggaatgaagtagttgaagttgaatgtaacaggagggtagtcaccgtagtataaggtggcagactctggcatccaaccatttgttcc |
44485566 |
T |
|
| Q |
504 |
aaccctaacaaagtgcatattgcagatttttcctatacaatctgcatgtac |
554 |
Q |
| |
|
|| |||||||||| ||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
44485565 |
aaacctaacaaagatcatattgcagattttgcctatacaatctccatgtac |
44485515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 432 - 554
Target Start/End: Complemental strand, 44475428 - 44475306
Alignment:
| Q |
432 |
gaagttgaaggtgatgggagggtagtcacggtggtatacgatggcggtctctggtatccaaccatctgttccaaccctaacaaagtgcatattgcagatt |
531 |
Q |
| |
|
||||||||| || || ||||||||| || || ||||| | |||| | |||||||||||||||||||||||||| |||||| ||| |||| |||||||| |
|
|
| T |
44475428 |
gaagttgaatgttataggagggtagccatcgttgtataaggtggcagactctggtatccaaccatctgttccaaacctaacgaagaacatactgcagatt |
44475329 |
T |
|
| Q |
532 |
tttcctatacaatctgcatgtac |
554 |
Q |
| |
|
|| |||||||||| ||| ||||| |
|
|
| T |
44475328 |
ttgcctatacaatttgcttgtac |
44475306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 44476363 - 44476305
Alignment:
| Q |
18 |
gatactagaatttgttatattaaaa-tattatagttctatgcaattaactaaaattagt |
75 |
Q |
| |
|
||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
44476363 |
gatactaaaatttgttatattaaaaatattctagttctatgcaattaactaaaattagt |
44476305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University