View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8289_high_3 (Length: 586)
Name: NF8289_high_3
Description: NF8289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8289_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-172; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 33681137 - 33681509
Alignment:
| Q |
1 |
caaatgacagagtattagagtaaaa--gttacgaaaaatattcacatatgcaagtccttcattttctggcaa-------tttgctttttgcagcttcttg |
91 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33681137 |
caaatgacagagtattagagtaaaaaagttacgaaaaatattcacatatgcaagtccttcattttctggcaatatgcaatttgctttttgcagcttcttg |
33681236 |
T |
|
| Q |
92 |
atttttgcttaaagtcaccccttctcccagcttaccttgctgcctcatttgcaaagaaattgagtaggttgttgctttcagttccaccttctggtgcatt |
191 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
33681237 |
atttttgcctaaagtcaccccttctcccagcttaccttgctgcctcatttgcaaagaaattgagtaggctgttgctctcagttccaccttctggtgcatt |
33681336 |
T |
|
| Q |
192 |
ggttattacatctccggttcacaatattttgcgtagacatccttcgatcaaactgtttggtgcaccgggta----aagatattctattttctatattttg |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33681337 |
ggttattacatctccggttcacaatattttgcgtagacatccttcgatcaaactgtttggtgcaccgggtaaattaagatattctattttctatattttg |
33681436 |
T |
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| Q |
288 |
tttttgcaattacttcaatagtaaaatttgtttcctggattactttatcattggaaatgttaatggagatcac |
360 |
Q |
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| T |
33681437 |
tttttgcaattacttcaatagtaaaatttgtttcctggattactttatcattggaaatgttaatggagatcac |
33681509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 33666537 - 33666878
Alignment:
| Q |
1 |
caaatgacagagtattagagtaaaagttacgaaaaatattcacatatgcaagtccttcattttctg-------gcaatttgctttttgcagcttcttgat |
93 |
Q |
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| T |
33666537 |
caaatgaaagagtactggagtgaatgtcacgaaaaatattcacatatgcaagtctttcattttctgacaatatgcaatttgctttttgcagcttcttgat |
33666636 |
T |
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| Q |
94 |
ttttgcttaaagtcaccccttctcccagcttaccttgctgcctcatttgcaaagaaattgagtaggttgttgctttcagttccaccttctggtgcattgg |
193 |
Q |
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| |||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33666637 |
tcttgcctaaagtcaccccttcttccagcttacctggctgcctcatttgcaaagaaattgagtaggctgttgctttcagttccaccttctggtgcattgg |
33666736 |
T |
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| Q |
194 |
ttattacatctccggttcacaatattttgcgtagacatccttcgatcaaactgtttggtgcaccgggtaaagatattctattttctatattttgtttttg |
293 |
Q |
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| T |
33666737 |
ttattacatctctggttcacaatattttgcgtagacatccttcgatc-aactgtttggtgcatcgggtaaagatagtcttgtgtctatattttgtttttg |
33666835 |
T |
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| Q |
294 |
caattacttcaatagtaaaatttgtttcctggattactttatc |
336 |
Q |
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|||| |||||| ||||||| |||||||||||||||||| |||| |
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| T |
33666836 |
caatcacttcattagtaaattttgtttcctggattactatatc |
33666878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 446 - 568
Target Start/End: Original strand, 33681703 - 33681824
Alignment:
| Q |
446 |
ttaaatagttgcatacttgcgtgtttgtgtattttgaattgtttccatattgtatctatgtttctcaaattagttttctattgatagagccaggagattg |
545 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33681703 |
ttaaatagttgcatacttgcgtgtttgtgtattttgaattgtttccattttgtatctatgtttctcaaattagttttctattgatagagccaggagattg |
33681802 |
T |
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| Q |
546 |
attggattcctggttcaaggatg |
568 |
Q |
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|||||| |||||||||||||||| |
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| T |
33681803 |
attgga-tcctggttcaaggatg |
33681824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 357 - 446
Target Start/End: Original strand, 33681571 - 33681660
Alignment:
| Q |
357 |
tcactataaacttttccatttagaaaatgatatatgttgtgttgaggaaatacttttcaattcatcttatatttagaattattgcagttt |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33681571 |
tcactataaacttttccatttagaaaatgatatatgttgtgttgaggaaatacttttcaattcatcttatatttagaattattgcagttt |
33681660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 496 - 568
Target Start/End: Original strand, 33667719 - 33667791
Alignment:
| Q |
496 |
tgtatctatgtttctcaaattagttttctattgatagagccaggagattgattggattcctggttcaaggatg |
568 |
Q |
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| T |
33667719 |
tgtatctatgtttctcaaattagttttctattggtagagccaggagattgatttgattcctggttcaaggatg |
33667791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 363 - 426
Target Start/End: Original strand, 33666966 - 33667029
Alignment:
| Q |
363 |
taaacttttccatttagaaaatgatatatgttgtgttgaggaaatacttttcaattcatcttat |
426 |
Q |
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||||||||||||||||||||||||| |||| |||||| |||||||||||||| ||||||||||| |
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| T |
33666966 |
taaacttttccatttagaaaatgatctatgctgtgttcaggaaatacttttctattcatcttat |
33667029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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