View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8289_low_11 (Length: 300)
Name: NF8289_low_11
Description: NF8289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8289_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 184 - 282
Target Start/End: Complemental strand, 40360502 - 40360404
Alignment:
| Q |
184 |
ggaagatttttataccaaggatctccgagtttcagaatttattgcaccgaagctgatacaaggaaggaagaggaagaagaagaatgtaagagttcaaac |
282 |
Q |
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| T |
40360502 |
ggaagatttttataccaaggatctccgagtttcagaatttattgcaccgaagctgatacaaggaaggaagaggaagaagaagaatgtaagagttcaaac |
40360404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 40360682 - 40360641
Alignment:
| Q |
13 |
gcagagaccaaaacagaggagggaaacattaaagggacagtg |
54 |
Q |
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| T |
40360682 |
gcagagaccaaaacagaggagggaaatattgaagggacagtg |
40360641 |
T |
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