View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8289_low_12 (Length: 279)
Name: NF8289_low_12
Description: NF8289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8289_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 36776305 - 36776584
Alignment:
| Q |
1 |
gacagtcttgtcatcatgcttaaattacgatcattatatttgaacacttcatattcttctacattcatataacattttattttatctct--------ctt |
92 |
Q |
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| T |
36776305 |
gacagtcttgtcatcatgcttaaattacgatcattatatttgaacacttcatattcttctacattcatataacattgtattttatctctttatctctctt |
36776404 |
T |
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| Q |
93 |
tctatatgannnnnnnnna-aaatcttcgtataagaattgtaacttatcacatcatctcctctaatctttctccctcgagaaacataaactcatatgggt |
191 |
Q |
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| T |
36776405 |
tctatatgattttttcttttaaatcttcgtataataattgtaacttatcacatcatcttctctaatctttctccctcgagaaacataaactcatatgggt |
36776504 |
T |
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| Q |
192 |
gtgcatcaaacaattttctttaaataatcatgtttattttccaactttattgatgttgtatctaacttcaagtgatgtcc |
271 |
Q |
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| T |
36776505 |
gtgcatcaaacaattttctttaaataatcatgtttattttccaactttattgatgttgtatctaacttcaaatggtgtcc |
36776584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 256
Target Start/End: Original strand, 36789289 - 36789412
Alignment:
| Q |
137 |
tatcacatcatctcctctaatctttctccctcgagaaacataaactcatatgggtgtgcatcaaacaattttctttaaat----aatcatgtttattttc |
232 |
Q |
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| T |
36789289 |
tatcacatcattttctctaatatttctctatcgagaagtatacactcatatgggtgtacaccaaacattttcctataaactatcaatcatgttttctttc |
36789388 |
T |
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| Q |
233 |
caactttattgatgttgtatctaa |
256 |
Q |
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| T |
36789389 |
caactttattgatgttgtatctaa |
36789412 |
T |
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