View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8289_low_3 (Length: 586)

Name: NF8289_low_3
Description: NF8289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8289_low_3
NF8289_low_3
[»] chr5 (6 HSPs)
chr5 (1-360)||(33681137-33681509)
chr5 (1-336)||(33666537-33666878)
chr5 (446-568)||(33681703-33681824)
chr5 (357-446)||(33681571-33681660)
chr5 (496-568)||(33667719-33667791)
chr5 (363-426)||(33666966-33667029)


Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-172; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 33681137 - 33681509
Alignment:
Q  1 caaatgacagagtattagagtaaaa--gttacgaaaaatattcacatatgcaagtccttcattttctggcaa-------tttgctttttgcagcttcttg 91  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  33681137 caaatgacagagtattagagtaaaaaagttacgaaaaatattcacatatgcaagtccttcattttctggcaatatgcaatttgctttttgcagcttcttg 33681236  T
Q  92 atttttgcttaaagtcaccccttctcccagcttaccttgctgcctcatttgcaaagaaattgagtaggttgttgctttcagttccaccttctggtgcatt 191  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  33681237 atttttgcctaaagtcaccccttctcccagcttaccttgctgcctcatttgcaaagaaattgagtaggctgttgctctcagttccaccttctggtgcatt 33681336  T
Q  192 ggttattacatctccggttcacaatattttgcgtagacatccttcgatcaaactgtttggtgcaccgggta----aagatattctattttctatattttg 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  33681337 ggttattacatctccggttcacaatattttgcgtagacatccttcgatcaaactgtttggtgcaccgggtaaattaagatattctattttctatattttg 33681436  T
Q  288 tttttgcaattacttcaatagtaaaatttgtttcctggattactttatcattggaaatgttaatggagatcac 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33681437 tttttgcaattacttcaatagtaaaatttgtttcctggattactttatcattggaaatgttaatggagatcac 33681509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 33666537 - 33666878
Alignment:
Q  1 caaatgacagagtattagagtaaaagttacgaaaaatattcacatatgcaagtccttcattttctg-------gcaatttgctttttgcagcttcttgat 93  Q
    ||||||| |||||| | |||| || || |||||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||    
T  33666537 caaatgaaagagtactggagtgaatgtcacgaaaaatattcacatatgcaagtctttcattttctgacaatatgcaatttgctttttgcagcttcttgat 33666636  T
Q  94 ttttgcttaaagtcaccccttctcccagcttaccttgctgcctcatttgcaaagaaattgagtaggttgttgctttcagttccaccttctggtgcattgg 193  Q
    | |||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33666637 tcttgcctaaagtcaccccttcttccagcttacctggctgcctcatttgcaaagaaattgagtaggctgttgctttcagttccaccttctggtgcattgg 33666736  T
Q  194 ttattacatctccggttcacaatattttgcgtagacatccttcgatcaaactgtttggtgcaccgggtaaagatattctattttctatattttgtttttg 293  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||  | |||||||||||||||||    
T  33666737 ttattacatctctggttcacaatattttgcgtagacatccttcgatc-aactgtttggtgcatcgggtaaagatagtcttgtgtctatattttgtttttg 33666835  T
Q  294 caattacttcaatagtaaaatttgtttcctggattactttatc 336  Q
    |||| |||||| ||||||| |||||||||||||||||| ||||    
T  33666836 caatcacttcattagtaaattttgtttcctggattactatatc 33666878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 446 - 568
Target Start/End: Original strand, 33681703 - 33681824
Alignment:
Q  446 ttaaatagttgcatacttgcgtgtttgtgtattttgaattgtttccatattgtatctatgtttctcaaattagttttctattgatagagccaggagattg 545  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33681703 ttaaatagttgcatacttgcgtgtttgtgtattttgaattgtttccattttgtatctatgtttctcaaattagttttctattgatagagccaggagattg 33681802  T
Q  546 attggattcctggttcaaggatg 568  Q
    |||||| ||||||||||||||||    
T  33681803 attgga-tcctggttcaaggatg 33681824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 357 - 446
Target Start/End: Original strand, 33681571 - 33681660
Alignment:
Q  357 tcactataaacttttccatttagaaaatgatatatgttgtgttgaggaaatacttttcaattcatcttatatttagaattattgcagttt 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33681571 tcactataaacttttccatttagaaaatgatatatgttgtgttgaggaaatacttttcaattcatcttatatttagaattattgcagttt 33681660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 496 - 568
Target Start/End: Original strand, 33667719 - 33667791
Alignment:
Q  496 tgtatctatgtttctcaaattagttttctattgatagagccaggagattgattggattcctggttcaaggatg 568  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  33667719 tgtatctatgtttctcaaattagttttctattggtagagccaggagattgatttgattcctggttcaaggatg 33667791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 363 - 426
Target Start/End: Original strand, 33666966 - 33667029
Alignment:
Q  363 taaacttttccatttagaaaatgatatatgttgtgttgaggaaatacttttcaattcatcttat 426  Q
    ||||||||||||||||||||||||| |||| |||||| |||||||||||||| |||||||||||    
T  33666966 taaacttttccatttagaaaatgatctatgctgtgttcaggaaatacttttctattcatcttat 33667029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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