View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8289_low_4 (Length: 469)
Name: NF8289_low_4
Description: NF8289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8289_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 25 - 448
Target Start/End: Complemental strand, 5663378 - 5662953
Alignment:
| Q |
25 |
cacatgattctcataagcagtttatagtaacatgttagcaatatcagcatagaagaaaactattataacaacagtagtataataacaggaggaagatgaa |
124 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
5663378 |
cacatgattctcataagcagattatagtaacatgttagcaatatcagcacagaagaaaactattataacaacagtagtataataacagaa---agatgaa |
5663282 |
T |
|
| Q |
125 |
gaagttataacccaaggcagcagaacataactactggctcgtgagtaccaaat-tgacaggaaatggaggagaacgtgaagctaatgt--ctttaactac |
221 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||| | |
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| T |
5663281 |
gaagttataaaccaaggcagcagaacataactactggctcgtgagtaccaaaactgacaggaaatggaggagaatgtgaagctaatgtgtctttaacttc |
5663182 |
T |
|
| Q |
222 |
ttgtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccgtcaacaatgaattcaatcttgctaatacaattacctg |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
5663181 |
ttgtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccataaacaatgaattcaatcttgctaatacaattacctg |
5663082 |
T |
|
| Q |
322 |
gatgcaattgtattgaataatcattcaaccgtgttctttcgttttattgaacacgg--atgggcgtatttgggcgaatttggaaatggatataaatgtag |
419 |
Q |
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|||||| |||||| ||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||| |
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| T |
5663081 |
gatgcacttgtatagaataatcattcaaccgtgtttttccgttttattgaacacggatatgggcgtatttgggcaaatttggaaatggatatagatgtag |
5662982 |
T |
|
| Q |
420 |
aagcagaacccgagaggaagaagtggaag |
448 |
Q |
| |
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| T |
5662981 |
aagcagaacccgagaggaagaagtggaag |
5662953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 136 - 448
Target Start/End: Complemental strand, 52131504 - 52131195
Alignment:
| Q |
136 |
ccaaggcagcagaacataactactggctcgtgagtaccaaattgacaggaaatggaggagaacgtgaagcta-atg-tctttaactacttgtgagaagcg |
233 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||| ||| ||||||||||||| |
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| T |
52131504 |
ccaaggcagcagaacataact----tctcgtgagtaccaaattgacaggaaatggaggataacgtgacgctacatgttctttgacttcttgtgagaagcg |
52131409 |
T |
|
| Q |
234 |
accatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccgtcaacaatgaattcaatcttgctaatacaattacctggatgcaattgta |
333 |
Q |
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||||||||||||||| |||||||||||||||| ||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
52131408 |
accatggtcttaccgatgacagaagcttcgaaatcggattgagatacaccgtcaataataaattcaatcttgctaatacaattacctggatgcacttgta |
52131309 |
T |
|
| Q |
334 |
ttgaataatcattcaaccgtgttctttcgttttattgaacacggatgggcgtatttgggcgaatttggaaatggatataaatgtagaagcagaacccgag |
433 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||| |
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| T |
52131308 |
ttgaataatcattcaaccgtgttc-ttcgttttactgaacacggatgggcgtatttgggcgaatttggatatggatatagatgtagaagcataacccgag |
52131210 |
T |
|
| Q |
434 |
aggaagaagtggaag |
448 |
Q |
| |
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||||||||||||||| |
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| T |
52131209 |
aggaagaagtggaag |
52131195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 162; Significance: 3e-86; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 224 - 448
Target Start/End: Original strand, 11649155 - 11649369
Alignment:
| Q |
224 |
gtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccgtcaacaatgaattcaatcttgctaatacaattacctgga |
323 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11649155 |
gtgagaagcgaccatggtcttaccgatgacagaagcttcgaagtcggagcgagatacaccgtcaacaatgaattcaatcttgctaatacaattacctgga |
11649254 |
T |
|
| Q |
324 |
tgcaattgtattgaataatcattcaaccgtgttctttcgttttattgaacacggatgggcgtatttgggcgaatttggaaatggatataaatgtagaagc |
423 |
Q |
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|||| ||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| ||||||| ||||||||| |||||||||| |
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| T |
11649255 |
tgcacttgtattgaataatcattcaaccgtgttcttcctttttagtgaacacggatgggcgt----------atttggatatggatatagatgtagaagc |
11649344 |
T |
|
| Q |
424 |
agaacccgagaggaagaagtggaag |
448 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
11649345 |
agaacccgagaggaagaagtggaag |
11649369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 169 - 387
Target Start/End: Complemental strand, 22007884 - 22007660
Alignment:
| Q |
169 |
gtaccaaattgacaggaaatggaggagaa----cgtgaagcta-atgt-ctttaactacttgtgagaagcgaccatggtcttaccggtgacagaagcttc |
262 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||| |||| |||||||| ||||||| |||||||||||||||| || ||||||||| || |
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| T |
22007884 |
gtaccaaattgacaggaaatggaggagaatcaacgtgaagctacatgttctttaacttcttgtgaaaagcgaccatggtcttgacgatgacagaagtttt |
22007785 |
T |
|
| Q |
263 |
gaagtcggagcgagatacaccgtcaacaatgaattcaatcttgctaatacaattacctggatgcaattgtattgaataatcattcaaccgtgttctttcg |
362 |
Q |
| |
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||||||| |||||||||||||| |||||||||||||| |||| ||||||| ||| ||||||||| ||||||||||||||||||||| |||||||| | |
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| T |
22007784 |
gaagtcgaagcgagatacaccgccaacaatgaattcagtcttcgtaatacacttatctggatgcacctgtattgaataatcattcaacagtgttcttcct |
22007685 |
T |
|
| Q |
363 |
ttttattgaacacggatgggcgtat |
387 |
Q |
| |
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||||| ||||||| || |||||||| |
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| T |
22007684 |
ttttactgaacacagaggggcgtat |
22007660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 11649126 - 11649159
Alignment:
| Q |
136 |
ccaaggcagcagaacataactactggctcgtgag |
169 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |
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| T |
11649126 |
ccaaggcagcagaacataactgctggctcgtgag |
11649159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 372
Target Start/End: Complemental strand, 14231304 - 14231210
Alignment:
| Q |
276 |
gatacaccgtcaacaatgaattcaatcttgctaatacaattacctggatgcaattgtattgaataatcattcaaccgtgttctttcgttttattgaa |
372 |
Q |
| |
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||||||||| ||||||| ||| | |||| |||||| |||| ||||||||| |||||||||| |||||||||||||||||| | ||||| |||| |
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|
| T |
14231304 |
gatacaccgccaacaataaatctagtcttcctaatattattatctggatgcacctgtattgaat--tcattcaaccgtgttcttcctttttactgaa |
14231210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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