View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8289_low_7 (Length: 369)
Name: NF8289_low_7
Description: NF8289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8289_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 359
Target Start/End: Original strand, 36775546 - 36775889
Alignment:
| Q |
16 |
agataataattccaaggatggtgaaaaattgaaagaaaaggtgaacatagtgaagaaaccacgttgttttcctcctccacttcctttactctttagtcaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36775546 |
agataataattccaaggatggtgaaaaattgaaagaaaaggtgaacatggtgaagaaaccacgttgttttcctcctccacttcctttactctttagtcaa |
36775645 |
T |
|
| Q |
116 |
agtcaaccactcaaaatgaggccccatcgtgacaatggaagattgtttttgttcctagaagtagtgtcggttccttcacataacaacttcttggctaagc |
215 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36775646 |
agtcaaccactcaaaatgaggccccaccgtgacaatggaagattgtttttgttcctagaagtagtgtcggttccatcacataacaacttcttggctaagc |
36775745 |
T |
|
| Q |
216 |
gacaaaatggtcgccttatactcacatttgctaatgaagaagagaaaattgttgatgactttgagcagcatggttcattgccaaggtcattgcctttgat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36775746 |
gacaaaatggtcgccttatactcacatttgctaatgaagaagagaaaattgttgatgactttgagcaacatggttcattgccaaggtcattgcctttgat |
36775845 |
T |
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| Q |
316 |
caatgttgttcctttgattcctaatgatcaacaaaatagtatta |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36775846 |
caatgttgttcctttgattcctaatgatcaacaaaatagtatta |
36775889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 37 - 280
Target Start/End: Original strand, 36788246 - 36788492
Alignment:
| Q |
37 |
tgaaaaattgaaagaaaaggtgaacatagtgaagaaaccacgttgttttcctcctccacttcctttactctttagtcaaagtcaaccactcaaaatgagg |
136 |
Q |
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| T |
36788246 |
tgaaaacttgaaagaaaaggcggacatggtgaagaaaccacgttgttatcctcctccacttccttcactctttagtcatagccaaccacttcaaatgatg |
36788345 |
T |
|
| Q |
137 |
ccccatcgtgacaatggaagattgtttttgttcctagaagtagtgtcggttccttcacataacaacttcttggctaagcgacaaaatggtcgccttatac |
236 |
Q |
| |
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|||| |||||||||||||| |||| |||||||||| |||| ||||| ||||||||| ||| || ||||| |||||||||||||||||||||||||| | |
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| T |
36788346 |
ccccgccgtgacaatggaaggttgtctttgttcctacaagttgtgtcaattccttcacctaataaattcttcgctaagcgacaaaatggtcgccttatcc |
36788445 |
T |
|
| Q |
237 |
tcacatttg---ctaatgaagaagagaaaattgttgatgactttgag |
280 |
Q |
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|||| |||| ||||||| ||||| |||||| ||| ||||||||| |
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| T |
36788446 |
tcacgtttgctactaatgatgaagaagaaattgatgaggactttgag |
36788492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 36760229 - 36760493
Alignment:
| Q |
16 |
agataataattccaaggatggtgaaaaattgaaagaaaaggtgaacatagtgaagaaaccacgttgttttcctcctccacttcctttactctttagtcaa |
115 |
Q |
| |
|
|||||| ||||| || |||| |||||| ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||| ||| ||||||||| |
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| T |
36760229 |
agataacaattcaaatgatgatgaaaacttgaaagaaaaggtggacatggtgaagaagattcgttgttttcctcctccacttccttcactttttagtcaa |
36760328 |
T |
|
| Q |
116 |
agtcaaccactcaaaatgaggccccatcgtgacaatggaagattgtttttgttcctagaagtagtgtcggttccttcacataacaacttcttggctaagc |
215 |
Q |
| |
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|| |||||||| |||||| ||||| |||||||||||||| |||||||||||||| |||| ||||| |||||||||||||| |||||||| | |||| |
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| T |
36760329 |
agccaaccacttcaaatgacaccccaacgtgacaatggaaggctgtttttgttcctacaagttgtgtcagttccttcacataataacttcttcaccaagc |
36760428 |
T |
|
| Q |
216 |
gacaaaatggtcgccttatactcacatttgctaatgaagaagagaaaattgttgatgactttgag |
280 |
Q |
| |
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||||||||||||| ||| | ||| | ||| |||||| ||||| |||||| |||||| |||||| |
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| T |
36760429 |
gacaaaatggtcgtcttgtcctctcgtttaataatgatgaagaagaaattgatgatgagtttgag |
36760493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 36796628 - 36796865
Alignment:
| Q |
16 |
agataataattccaaggatggtgaaaaattgaaagaaaaggtgaacatagtgaagaaaccacgttgttttcctcctccacttcctttactctttagtcaa |
115 |
Q |
| |
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|||||| || ||||| ||| ||||||||||||||||| |||| ||| |||||||||||||||| || ||||||| ||||||||| |||| |||||| |
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| T |
36796628 |
agataacaactccaattatgatgaaaaattgaaagaaatagtgagcatggtgaagaaaccacgttcttatcctccttcacttccttcactcacaagtcaa |
36796727 |
T |
|
| Q |
116 |
agtcaaccac-tcaaaatgaggccccatcgtgacaatggaagattgtttttgttcctagaagtagtgtcggttccttcacataacaacttcttggctaag |
214 |
Q |
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||| ||| ||| ||| | ||| |||||||||||||| ||||||||||||| |||| ||| |||||||||||| ||| ||||||| |||||| |
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| T |
36796728 |
agtgaacatggtcagaatcaa---ccaccgtgacaatggaag---gtttttgttcctacaagttgtgcaggttccttcacacaactacttcttcgctaag |
36796821 |
T |
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| Q |
215 |
cgacaaaatggtcgccttatactcacatttgctaatgaagaaga |
258 |
Q |
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|||||||||||||||||||| ||||| ||| | |||||||||| |
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| T |
36796822 |
cgacaaaatggtcgccttatcctcacgtttaatgatgaagaaga |
36796865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 36797041 - 36797077
Alignment:
| Q |
284 |
catggttcattgccaaggtcattgcctttgatcaatg |
320 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||| |
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| T |
36797041 |
catggttcattgccacggtcattgcctttgatcaatg |
36797077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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