View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8289_low_9 (Length: 316)
Name: NF8289_low_9
Description: NF8289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8289_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 5402878 - 5403156
Alignment:
| Q |
19 |
acttacccaatgaggataacacaagaagggtatgtgaaagacttgagtaatggagtttattttcctgatacaaattctctagtgaaagggaagagatcta |
118 |
Q |
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| T |
5402878 |
acttatccaatgagggtaacacaagaagggtatgtgaaagacttgagtaatggagtttattttcctgatacaaattctctagtgaaagggaagagatcta |
5402977 |
T |
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| Q |
119 |
cattgttgccccctaacttgaccacttaggatcaaatttcgtgcactgtttatagtttcaaaaattgctttaaaacatatttgacataaaatacaatgta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5402978 |
cattgttgccccctaacttgaccacttaggatcaaatttggtgcactgtttataatttcaaaaattgctttaaaacaaatttgacataaaatacaatgta |
5403077 |
T |
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| Q |
219 |
atcatttttatctataaattgaagaagaatatggatctcatacttttcacaacaattagttctatctatagacatattt |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5403078 |
atcatttttatctataaattgaagaagaatatggatctcatacttttcacaacaattagttctatctatagacatattt |
5403156 |
T |
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