View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8290_high_1 (Length: 637)

Name: NF8290_high_1
Description: NF8290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8290_high_1
NF8290_high_1
[»] chr8 (1 HSPs)
chr8 (17-627)||(41221415-41222040)


Alignment Details
Target: chr8 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 17 - 627
Target Start/End: Original strand, 41221415 - 41222040
Alignment:
Q  17 caatagcattatattatcaaagaaataaaagaaagactttcagcttgatcaagtggtgcaagcataacgtctaaagattcctaacactaaactcataacc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41221415 caatagcattatattatcaaagaaataaaagaaagactttcagcttgatcaagtggtgcaagcataacgtctaaagattcctaacactaaactcataacc 41221514  T
Q  117 caaagtactgaaattgaccaactccgtaaccactactcttcagatattgttctgctactcccactgttacatcatcttcatgcaaccgcaattcttccat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41221515 caaagtactgaaattgaccaactccgtaaccactactcttcagatattgttctgctactcccactgttacatcatcttcatgcaaccgcaattcttccat 41221614  T
Q  217 ctacatcaaagccacataagaatcaaaaccctttcaactcaatcaatagtcatttatataatgtgatcttcataatgtcactgttataactgaaaagcac 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41221615 ctacatcaaagccacataagaatcaaaaccctttcaactcaatcaatagtca-ttatataatgtgatcttcataatgtcactgttataactgaaaagcac 41221713  T
Q  317 ttgtgcaaattgtgtcattagaagattataatatgtatttatttctgtcattttccagcttgtcnnnnnnnt--------------aaatttacattata 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |              ||||||||||||||    
T  41221714 ttgtgcaaattgtgtcattagaagattataatatgtatttatttctgtcattttccagcttgtcaaaagaataaatttactaaagcaaatttacattata 41221813  T
Q  403 cagaagattaaaatattaaataacataaga--nnnnnnnnnnngaagaaattaaataacattagatttacttgtacaaactatggtgtgacacatttaac 500  Q
    ||||||||||||||||||||||||||||||              ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41221814 cagaagattaaaatattaaataacataagatttttttttttttaaagaaattaaataacataagatttacttgtacaaactatggtgtgacacatttaac 41221913  T
Q  501 cgaatgtgcaatccttacatgcttacaatttcaaagacgtttgctctcacattgatgttgaaaatgaagaaagcaacaaaatgaatcagtaatatttacc 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41221914 cgaatgtgcaatccttacatgcttacaatttcaaagacgtttgctctcacattgatgttgaaaatgaagaaagcaacaaaatgaattagtaatatttacc 41222013  T
Q  601 cagaaatcgacttcgtcttcatctctg 627  Q
    |||||||||||||||||||||||||||    
T  41222014 cagaaatcgacttcgtcttcatctctg 41222040  T

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