View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8290_low_2 (Length: 566)
Name: NF8290_low_2
Description: NF8290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8290_low_2 |
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| [»] scaffold0077 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 4 - 524
Target Start/End: Complemental strand, 39605156 - 39604626
Alignment:
| Q |
4 |
aacaacaactatcaataacacaaaacattaattctaacaccatcaaattccagaccaccaacaccatcaaatccaccaccaccattgtgtaatctaacac |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39605156 |
aacaacaactatcaataacacaaaacattaattctaacaccatcaaattccagaccaccaacaccatcaaatccaccaccaccattgtgtaatctaacac |
39605057 |
T |
|
| Q |
104 |
cagtaaaatcataacccattgttcattcatctcttctatnnnnnnnntccaatcggataccnnnnnnntgttcttaggtacttactagttgaaacaagaa |
203 |
Q |
| |
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||||| ||||||||| |||| |||||||||||||||||| || ||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
39605056 |
cagtagaatcataactcattcttcattcatctcttctataaaaaaa-tcaaatcggataccaaaaaaatgttcttaggaacttactagttgaaacaagaa |
39604958 |
T |
|
| Q |
204 |
caatcaataatcaaagcaaacacacaacgaggttaacaatggcggcacttttttctatgacagcaaaaatttatcatcacactaaacaaaagggagcgcc |
303 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39604957 |
caatcaataatcaaagcaaacacacagtgaggttaacaatggcggcacttttttctatgacagcaaaaatttattatcacactaaacaaaagggagcgcc |
39604858 |
T |
|
| Q |
304 |
tccggcagcaaaacaggcctccaaaaacccaaaaccaaacctacaaataggcaatctgccacttatatacaaaca-----------agaaaaacaagtaa |
392 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
39604857 |
tccggcagcaaaacaggtctccaaaaacccaaaaccaaacctacaaataggcaatccgccacttatatacaaacaagaaccaacaaagaaaaacaagtaa |
39604758 |
T |
|
| Q |
393 |
cacaaaggaaccttacagacagcaacataaaacgaagaaagcaaaaacaacacagacttaagcgactcagcaaaacctaaagaaatcacagtaaagatca |
492 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||| |
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| T |
39604757 |
cacaaaggaaccttacagacagcagcataaaacgaagaaagcaaaaacaacacagacttaagtgactcagcaaaaccgaaataaatcacagtaaagatca |
39604658 |
T |
|
| Q |
493 |
atggcggtcacttctgaactatctccctctaa |
524 |
Q |
| |
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||||||| |||||||||||||||||||||||| |
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| T |
39604657 |
atggcggccacttctgaactatctccctctaa |
39604626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 4 - 547
Target Start/End: Original strand, 40793178 - 40793731
Alignment:
| Q |
4 |
aacaacaactatcaataacacaaaacattaattctaacaccatcaaattccagaccaccaacaccatcaaatccaccaccaccattgtgtaatctaacac |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40793178 |
aacaacaactatcaataacacaaaacattaattctaacaccatcaaattccagaccaccaacaccatcaaatccaccaccaccattgtgtaatctaacac |
40793277 |
T |
|
| Q |
104 |
cagtaaaatcataacccattgttcattcatctcttctat-nnnnnnnntccaatcggataccnnnnnnntgttcttaggtacttactagttgaaacaaga |
202 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||| || ||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
40793278 |
cagtagaatcataacccattcttcattcatctcttctatagaaaaaaatcaaatcggataccaaaagaatgttcttaggaacttactagttgaaacaaga |
40793377 |
T |
|
| Q |
203 |
acaatcaataatcaaagcaaacacacaacgaggttaaca--atggcggcactt--------ttttctatgacagcaaaaatttatcatcacactaaacaa |
292 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||| ||||||||||| |||||||||||||| |
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| T |
40793378 |
acaatcaataatcaaagcaaacacacagtgaggttaacaatatggcggcactttttttttcttttctatgacaacaaaaatttattatcacactaaacaa |
40793477 |
T |
|
| Q |
293 |
aagggagcgcctccggcagcaaaacaggcctccaaaaacccaaaaccaaacctacaaataggcaatctgccacttatatacaaac-----------aaga |
381 |
Q |
| |
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|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||| |
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| T |
40793478 |
aagggagcgcctccagcagcaaatcaggcctccaaaaacccaaaaccaaacctacaaatatgcaatccgccacttatatacaaacaagaaccaacaaaga |
40793577 |
T |
|
| Q |
382 |
aaaacaagtaacacaaaggaaccttacagacagcaacataaaacgaagaaagcaaaaacaacacagacttaagcgactcagcaaaacctaaagaaatcac |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40793578 |
aaaacaagtaacacaaaggaaccttacagacagcagcat-aaacaaagatagcaaaaacaacacagacttaagcgactcagcaaaaccgaaagaaatcac |
40793676 |
T |
|
| Q |
482 |
agtaaagatcaatggcggtcacttctgaactatctccctctaaaatcttagaaacaacaatcaacg |
547 |
Q |
| |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
40793677 |
agtaaagatcaatggcg-----------accatctccctctaaaatcttagaaacaacaatcaacg |
40793731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 491 - 545
Target Start/End: Complemental strand, 21946783 - 21946729
Alignment:
| Q |
491 |
caatggcggtcacttctgaactatctccctctaaaatcttagaaacaacaatcaa |
545 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||| ||||||| |
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|
| T |
21946783 |
caatggcggccacttccgaactatctccctctaaaatcttagaaacaccaatcaa |
21946729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 63 - 547
Target Start/End: Original strand, 53060 - 53565
Alignment:
| Q |
63 |
aacaccatcaaatccaccaccaccattgtgtaatctaacaccagtaaaatcataacccattgttcattcatctcttctatnnnnnnnn--tccaatcgga |
160 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||| |
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| T |
53060 |
aacaccatcaaatccaccacgtccattgtgtaatctaacaccagtaaaatcataacccattcttcattcatctcttctataaaaaaaaaatcaaatcgga |
53159 |
T |
|
| Q |
161 |
taccnnnnnnntgttcttaggtacttactagttgaaacaagaacaatcaataatcaaagcaaacacacaacgaggttaacaatggcggcactttttt--- |
257 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53160 |
taccaaaaaaatgttcttaggaacttactagttgaaacaagaacaatcaataatcaaagcaaacacactgtgaggttaacaatggcggcacttttttttt |
53259 |
T |
|
| Q |
258 |
-----ctatgacagcaaaaatttatcatcacactaaacaaaagggagcgcctccggcagcaaaacaggcctccaaaaacccaaaaccaaacctacaaata |
352 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53260 |
cttttctatgacagcaaatatttattatcacactaaacaaaagagagcgcctccaacagcaaaacaggcctccaaaaacccaaaaccaaacctacaaata |
53359 |
T |
|
| Q |
353 |
ggcaatctgccacttatatacaaacaaga-----------aaaacaagtaacacaaaggaaccttacagacagcaacataaaacgaagaaagcaaaaaca |
441 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||||||||||||||| |||||||||||||||| |||||||| ||||||| ||||| | |
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|
| T |
53360 |
ggcaatccaccacttatatataaacaagaaccaacaaagaaaaacaagtaacacaaagtaaccttacagacagcagcataaaacaaagaaagaaaaaata |
53459 |
T |
|
| Q |
442 |
acacagacttaagcgactcagcaaaacctaaagaaatcacagtaaagatcaatggcggtcacttctgaactatctccctctaaaatcttagaaacaacaa |
541 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53460 |
acacagacttaagcgactcagcaaaaccgaaagaaatcacagtaaagatcaatggcggccacttctgaactatctccctctaaaatcttagaaacaacaa |
53559 |
T |
|
| Q |
542 |
tcaacg |
547 |
Q |
| |
|
|||||| |
|
|
| T |
53560 |
tcaacg |
53565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 53025 - 53072
Alignment:
| Q |
4 |
aacaacaactatcaataacacaaaacattaattctaacaccatcaaat |
51 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53025 |
aacaacaactatcaataacacaaaacattaattctaacaccatcaaat |
53072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 34818523 - 34818644
Alignment:
| Q |
7 |
aacaactatcaataacacaaaacattaattctaacaccatcaaattccagacc----------accaacaccatcaaat---ccaccaccaccattgtgt |
93 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||| | | |||||||||||||||| |||||||||||||||||| |
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|
| T |
34818523 |
aacaactatcaacaacacaa--cattaattctaacaccatcaaattccaaaaccaccaccaacaccaacaccatcaaattcaccaccaccaccattgtgt |
34818620 |
T |
|
| Q |
94 |
aatctaacaccagtaaaatcataa |
117 |
Q |
| |
|
||| ||||||||||| |||||||| |
|
|
| T |
34818621 |
aatttaacaccagtagaatcataa |
34818644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 7369375 - 7369435
Alignment:
| Q |
57 |
accaccaacaccatcaaatccaccaccaccattgtgtaatctaacaccagtaaaatcataa |
117 |
Q |
| |
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||||||||||||||||||| ||||||||||| | ||||||||||||||||| |||||||| |
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|
| T |
7369375 |
accaccaacaccatcaaattcaccaccaccaccgcgtaatctaacaccagtagaatcataa |
7369435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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